Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30793
         (410 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0257 + 16170914-16171113,16171362-16171554,16171929-161720...    27   7.7  
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    27   7.7  

>09_04_0257 +
           16170914-16171113,16171362-16171554,16171929-16172034,
           16172293-16172415,16172739-16172830,16173276-16173376,
           16173458-16173524,16174016-16174108,16174247-16174375
          Length = 367

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 81  FMHCRLVTFAFQXALIYFNSALKIRKKHNFTICPIY 188
           FM CR+V   F   L + +++LK+    +  I PIY
Sbjct: 46  FMACRVVLNFFFFFLFHLSNSLKLYNLLSLKILPIY 81


>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 111 FQXALIYFNSALKIRKKHNFTICPIYHD-YQVIY 209
           FQ + I FN  L + K   FT+ P+ HD Y  IY
Sbjct: 810 FQGSFITFNGKLSVGKLPPFTL-PVNHDGYMHIY 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,942,043
Number of Sequences: 37544
Number of extensions: 100344
Number of successful extensions: 128
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)