Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30792
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0226 - 11908455-11908562,11915971-11916240,11916463-119169...    27   6.5  
06_03_1268 + 28862095-28862231,28862651-28862753,28862901-28863050     27   6.5  
05_04_0382 + 20796567-20796810,20796894-20797750                       27   6.5  
04_04_0174 + 23305163-23305271,23305372-23305430,23305567-23305830     27   6.5  
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870...    27   8.7  

>11_03_0226 -
           11908455-11908562,11915971-11916240,11916463-11916946,
           11917148-11918060,11918628-11919300
          Length = 815

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 117 LLRSCPLLWKT*YSIQPVEAERNRFVVRSPQQDSVCRGRSFQSSLVR 257
           L R CP  WK     +PVE  ++ FVV  P +  + R  +F  + V+
Sbjct: 472 LQRLCPAKWKW----EPVEQGKDSFVVLFPSKGELQRAINFGGAEVK 514


>06_03_1268 + 28862095-28862231,28862651-28862753,28862901-28863050
          Length = 129

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 16/64 (25%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +3

Query: 171 EAERNRFVVRSPQQDSVCRGRSFQSSLVRWQHKYVQPKKVGM--APFYQLLVGSMVFFYA 344
           ++ER     R+ Q+D +C  +S +      +H  +  ++ G+    + +LLVG+M   Y 
Sbjct: 4   KSEREMERARNTQEDEICNAKSER----EMKHVMMLVRETGLLVRQWRELLVGAMHCLYV 59

Query: 345 INYG 356
           +++G
Sbjct: 60  LSWG 63


>05_04_0382 + 20796567-20796810,20796894-20797750
          Length = 366

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 267 YVAISPGSTESSGHGRRSLAAATEPRTDFV 178
           YVA   GS   +GH   +++A   PR D V
Sbjct: 187 YVATPDGSPPYAGHSHGAVSAGNSPRADAV 216


>04_04_0174 + 23305163-23305271,23305372-23305430,23305567-23305830
          Length = 143

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -2

Query: 309 GRMEPCQPS*VVRTYVAISPGSTESSGHGRRSLAAATEPRTDFVQLQLAEWS 154
           G +EP   S  V+   A S G++   G GRR  AAA+   T  V+++ + W+
Sbjct: 54  GHVEPTPASGAVQRRPA-SSGASNRGGGGRRRRAAASSRST--VEMRASAWA 102


>03_06_0418 +
           33785482-33785870,33786098-33786173,33786985-33787071,
           33788096-33788143
          Length = 199

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = +1

Query: 121 YDPARYYGKPDTPFSQLKLNEIGSWFGRRSKTPSAVAGAFSRAW*DGNISTYNLRRLAWL 300
           Y PA+   K D    + ++  +   +G  SKTPS+   A         I  Y LR   WL
Sbjct: 92  YQPAKMSKKSDVKKKEEEITRLQEKYGLGSKTPSSAPDAPLEL-----ICNYVLRIKLWL 146

Query: 301 HSTN 312
            ++N
Sbjct: 147 CTSN 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,051,402
Number of Sequences: 37544
Number of extensions: 271287
Number of successful extensions: 685
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)