Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30792
         (508 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   7.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 151 DTPFSQLKLNEIGSWF 198
           ++P  QL LNEI +WF
Sbjct: 519 ESPDKQLTLNEIYNWF 534


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = +2

Query: 320 WQHGLLLCHQLWKN*APQELQIPLKN 397
           W   + +    WKN  P  L   LKN
Sbjct: 59  WNDKVFITIPRWKNGVPSNLNFFLKN 84


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 74  FGDYPKEYNPAVHGPXTILPATMENLIL 157
           + DY  ++NP  +G   +L    EN+ L
Sbjct: 90  WNDYKLKWNPEEYGGVEMLYVPSENIWL 117


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +2

Query: 179 TKSVRGSVAAARLRLPWPELSVEPGEMAT*VRTT*EGWHGSILPTTRWQHGL 334
           T+ V+   A+ + +L    +  EPG   T   +T       IL     QHGL
Sbjct: 153 TREVQPHDASEKEQLGLASVKAEPGSTGTTTTSTGTRLLHGILSQHPQQHGL 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,880
Number of Sequences: 438
Number of extensions: 2738
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)