Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30791
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    27   2.1  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    26   3.7  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   3.7  
SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.0  
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe...    26   5.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   8.7  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 494 IYLETPLNIILLYNIKNTFSRKTSIICGRNCASIKAIILAGLTYRHFAIETWS 336
           I+L   L I+ +  + + F +K S   G +C     II+AGL   ++A   WS
Sbjct: 389 IWLADALGIVTVMPLYDRFHKKFSFFTG-SCL----IIIAGLAVANYAPRAWS 436


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 413 HKL*KFFGKTCFLYYI 460
           H L K+FG+TC L YI
Sbjct: 53  HPLKKYFGETCLLEYI 68


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 135 NTITLGFFSTKEIK*YLNYNFESYY*KQTFFLLL 34
           NT+ +  +    +  YLN +F SYY     FLLL
Sbjct: 457 NTLRINEYMQSAMLNYLNKSFNSYYHAARCFLLL 490


>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 272 RDSSLNTILKDNISSEYLNCQCSM 343
           +D+ L + LKD+I  + +NC CS+
Sbjct: 114 QDAILKSELKDSILPKLVNCACSV 137


>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 495 CNTFLHLYYSTIINILLTFKLD 560
           C TF+HL Y T +  LL   LD
Sbjct: 426 CYTFMHLLYHTTLTYLLRNVLD 447


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/42 (28%), Positives = 26/42 (61%)
 Frame = -2

Query: 434 RKTSIICGRNCASIKAIILAGLTYRHFAIETWSIGSSDIQSL 309
           ++ S++  ++CAS ++   A +   +  I++W+I   +IQSL
Sbjct: 626 KRNSVLSNKSCASSESNTPASVKQDYDDIQSWTI-IEEIQSL 666


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,398
Number of Sequences: 5004
Number of extensions: 56786
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)