Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30791
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.8  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   2.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   2.3  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   5.4  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   7.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   7.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   7.1  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   7.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 528  WYYNINVKTYCNIFRDTVK 472
            W Y+ NV  +C I R  VK
Sbjct: 1677 WGYHHNVNKHCTIHRTQVK 1695


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -1

Query: 519 NINVKTYCNIFRDTVKYYSII 457
           ++  +TYCN+F  +V +++ +
Sbjct: 534 SVRAETYCNLFSLSVDHFNAV 554


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -1

Query: 519 NINVKTYCNIFRDTVKYYSII 457
           ++  +TYCN+F  +V +++ +
Sbjct: 502 SVRAETYCNLFSLSVDHFNAV 522


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 83  FKYYFISLVEKKP 121
           FKY  I+++EKKP
Sbjct: 539 FKYQGITILEKKP 551


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 489 IYCNTFLHLYYS 524
           +YCN +  LYY+
Sbjct: 99  LYCNNYKKLYYN 110


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 489 IYCNTFLHLYYS 524
           +YCN +  LYY+
Sbjct: 99  LYCNNYKKLYYN 110


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = +3

Query: 489 IYCNTFLHLYYS 524
           +YCN +  LYY+
Sbjct: 99  LYCNNYRKLYYN 110


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 519 NINVKTYCNIFRDTVKYYSII 457
           N N K Y N +     YY+II
Sbjct: 308 NYNYKNYNNNYNSKKLYYNII 328


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 519 NINVKTYCNIFRDTVKYYSII 457
           N N K Y N +     YY+II
Sbjct: 319 NYNYKNYNNNYNSKKLYYNII 339


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 208 IRCYDMTYAIYLIFQEKRLENSTS*YNYFGFLLY 107
           I C D+T AI+     K LE+S +  + + ++ Y
Sbjct: 13  IACQDVTSAIHQRKSSKNLEHSMNVIHEWKYIDY 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,780
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)