Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30788
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   1.7  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    26   2.2  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    24   9.0  

>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 182 FLLSLYLADTFSANTEMRFIVXEVDICILKIRYWY 78
           FLLS+Y  D+ S    + ++  + + C LK R WY
Sbjct: 423 FLLSVYPWDSTSEERRVIYLSLQEEYCTLK-RKWY 456


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 97  RMQISTSXTMKRISVLAEKVSAKYKESRKN 186
           R+QI       RI +L +K  A  K++R+N
Sbjct: 3   RLQIQLKLAASRIEILRQKEEALAKQARRN 32


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 175  SPCTWRTLSRPIPKCVSL 122
            SP +W  L++P P+  SL
Sbjct: 1211 SPTSWNLLTKPSPRSASL 1228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,307,088
Number of Sequences: 5004
Number of extensions: 20540
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)