Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30788
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1247 - 28676578-28676730,28677019-28677177,28677314-286774...    27   3.6  
12_01_0076 + 627796-627877,628706-628944,629129-629326,629415-62...    27   4.8  
07_03_1673 - 28532923-28533009,28533058-28533117,28533664-285337...    27   6.3  
01_01_0248 + 2041015-2041762,2042112-2042149                           27   6.3  

>06_03_1247 -
           28676578-28676730,28677019-28677177,28677314-28677412,
           28677504-28677554,28677712-28678983,28680209-28680412,
           28682330-28682439,28684962-28685067
          Length = 717

 Score = 27.5 bits (58), Expect = 3.6
 Identities = 19/73 (26%), Positives = 30/73 (41%)
 Frame = +1

Query: 88  RIFRMQISTSXTMKRISVLAEKVSAKYKESRKNKLKRTFVQAXDAAEQKAKRTFKNSINC 267
           R  R    +S T       ++    KY E ++    RTF+   D AE  ++RT  N + C
Sbjct: 190 RYLREPFRSSGTKAACPSSSKAPVRKYFEEKQG---RTFLGEADNAESSSRRTEANRLQC 246

Query: 268 TNTCNYT*DLRTY 306
           +       D+  Y
Sbjct: 247 SKKAVVEEDVHPY 259


>12_01_0076 +
           627796-627877,628706-628944,629129-629326,629415-629474,
           629596-629739,631700-631864,632636-632734,633114-633182,
           633274-633370,633994-634085,635021-635152,635446-635526,
           636284-636400,636497-636598
          Length = 558

 Score = 27.1 bits (57), Expect = 4.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 199 YASTYSFCSPCTWRTLSRPIPKCVSLFXRWISA 101
           +A+T +   PC W     P    +SLF  W+SA
Sbjct: 375 FAATMALLGPCFWLIARSPYLMYISLFL-WLSA 406


>07_03_1673 -
           28532923-28533009,28533058-28533117,28533664-28533732,
           28534757-28534862,28535058-28535203,28535805-28536017,
           28536523-28536546,28536647-28536704,28536739-28537022,
           28538890-28539063,28539427-28539825
          Length = 539

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -3

Query: 211 LARKYAST-YSFCSPCTWRTLSRPIPKCVSL 122
           L +K+A   Y +C PC W  +S+ I K +++
Sbjct: 169 LKKKHAPICYVWCDPCPWMHISQGIMKTLNI 199


>01_01_0248 + 2041015-2041762,2042112-2042149
          Length = 261

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 218 SXACTKVRFNLFFLLSLYLADTFSANTEMRF 126
           S AC   RFN+  +L L L     AN+E+ F
Sbjct: 100 SSACAATRFNMSSILVLSLLAVSRANSELLF 130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,588,812
Number of Sequences: 37544
Number of extensions: 133819
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)