Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30788
         (375 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051823-1|AAK93247.1|  439|Drosophila melanogaster LD33178p pro...    55   3e-08
AE014297-2018|AAF55177.2|  439|Drosophila melanogaster CG31301-P...    55   3e-08
M32078-4|AAB59192.1| 2077|Drosophila melanogaster sodium channel...    28   4.5  

>AY051823-1|AAK93247.1|  439|Drosophila melanogaster LD33178p
           protein.
          Length = 439

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +2

Query: 2   EVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYP 112
           ++RRSF+L HKD F E  LV LAQ + N+EF+GC+YP
Sbjct: 48  DLRRSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYP 84



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/42 (47%), Positives = 33/42 (78%)
 Frame = +1

Query: 115 SXTMKRISVLAEKVSAKYKESRKNKLKRTFVQAXDAAEQKAK 240
           S TM  ++ L+++++A +++ R+ +LKRTFV A DAAEQ+AK
Sbjct: 85  SATMLLVAELSKEIAADFRQKREQRLKRTFVSASDAAEQRAK 126


>AE014297-2018|AAF55177.2|  439|Drosophila melanogaster CG31301-PA
           protein.
          Length = 439

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 22/37 (59%), Positives = 29/37 (78%)
 Frame = +2

Query: 2   EVRRSFLLEHKDDFPEAELVTLAQIYTNIEFLGCRYP 112
           ++RRSF+L HKD F E  LV LAQ + N+EF+GC+YP
Sbjct: 48  DLRRSFMLAHKDRFEEDRLVCLAQTFVNMEFMGCKYP 84



 Score = 47.2 bits (107), Expect = 7e-06
 Identities = 20/42 (47%), Positives = 33/42 (78%)
 Frame = +1

Query: 115 SXTMKRISVLAEKVSAKYKESRKNKLKRTFVQAXDAAEQKAK 240
           S TM  ++ L+++++A +++ R+ +LKRTFV A DAAEQ+AK
Sbjct: 85  SATMLLVAELSKEIAADFRQKREQRLKRTFVSASDAAEQRAK 126


>M32078-4|AAB59192.1| 2077|Drosophila melanogaster sodium channel
           alpha subunit protein.
          Length = 2077

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 5   VRRSFLLEHKDDFPEAEL 58
           V RSF L+HKD FP+ +L
Sbjct: 907 VLRSFRLDHKDRFPDGDL 924


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,023,577
Number of Sequences: 53049
Number of extensions: 218757
Number of successful extensions: 623
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)