Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30788
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   2.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   3.6  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   3.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   4.8  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 41  FPEAELVTLAQIYTNIEFLGC 103
           FP   L+ L  I   I F GC
Sbjct: 50  FPSITLIVLGSIIFVISFFGC 70


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 127 KRISVLAEKVSAKYKESRKNKLKRTFVQAXDAAEQKAKRTFKNSINCTNTCNY 285
           KR S   E+    YK  R+ +  R   +       + +R+ +  I  +N  NY
Sbjct: 259 KRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNY 311


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +1

Query: 127 KRISVLAEKVSAKYKESRKNKLKRTFVQAXDAAEQKAKRTFKNSINCTNTCNY 285
           KR S   E+    YK  R+ +  R   +       + +R+ +  I  +N  NY
Sbjct: 270 KRYSRSREREQNSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNY 322


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 94  KFDIGIDLRQCH*FSFWKIVFV 29
           K +IGIDLR+ +    W I+ V
Sbjct: 185 KVEIGIDLREYYPSVEWDILGV 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,064
Number of Sequences: 438
Number of extensions: 1435
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)