Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30786
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   4.3  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   4.3  
AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory recept...    22   5.6  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.8  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = -3

Query: 424 LRLLVSICFQTFFSNSFSFCILFLVTRTK*INVVVIVVFRC 302
           + LL+ +C   F+     FC  F++     + ++ I  F C
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYC 290


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 246 WSQAPAH*PPVLNPRLPPQQRKTTMTTTLI 335
           W Q   + P    P++PP +  TT +++ +
Sbjct: 199 WMQVKRNVPKPTVPKIPPAEFPTTSSSSAL 228


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = +3

Query: 246 WSQAPAH*PPVLNPRLPPQQRKTTMTTTLI 335
           W Q   + P    P++PP +  TT +++ +
Sbjct: 199 WMQVKRNVPKPTVPKIPPAEFPTTSSSSAL 228


>AM292330-1|CAL23142.2|  408|Tribolium castaneum gustatory receptor
           candidate 9 protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 580 NKLQIMCVIEDDKVSVDLLTEKIXEF 657
           N+L  +C + D+K+S  +LT  +  F
Sbjct: 272 NRLCHLCFLLDEKLSYIILTSFLNNF 297


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 569 PTGTSLEAPQRRPSISIVRTCFPFPSYRFHHPMA 468
           P+G+S +      S S     +P+ S   HH  A
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQA 73


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = -2

Query: 569 PTGTSLEAPQRRPSISIVRTCFPFPSYRFHHPMA 468
           P+G+S +      S S     +P+ S   HH  A
Sbjct: 40  PSGSSPQHSSSSASTSPAARMYPYVSAAHHHHQA 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,665
Number of Sequences: 336
Number of extensions: 3208
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)