Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30786
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    91   1e-19
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   4.6  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   8.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    25   8.0  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 40/65 (61%), Positives = 54/65 (83%)
 Frame = +1

Query: 505 KQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIXEFEDFVQSVDI 684
           K VR+I+M+GL+WG SKLVPVG+G+NK QI  V+EDDKVS++ L E++  FED+VQS DI
Sbjct: 149 KAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKVSLEALQEELEGFEDYVQSTDI 208

Query: 685 AAFNQ 699
           AA ++
Sbjct: 209 AAMSK 213



 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 25/59 (42%), Positives = 31/59 (52%)
 Frame = +2

Query: 329 VDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 505
           +DLFGS                 + Y  KK+ KP  + KS + LDVKPWDDET M E+E
Sbjct: 91  IDLFGSDEEEDPEAERIKAERVAE-YNKKKAAKPKAVHKSLVTLDVKPWDDETPMDELE 148



 Score = 44.4 bits (100), Expect = 2e-05
 Identities = 22/43 (51%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +3

Query: 99  EKLRVWXYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASY 224
           +K  +  Y PSQAD  VF+ VG AP  A  P+  RWY QIA+Y
Sbjct: 21  DKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATY 63


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 518 VRTCFPFPSYRFHHP 474
           VR+C PFP  + HHP
Sbjct: 157 VRSCPPFPPTQHHHP 171


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +1

Query: 13  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 111
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 270 PPVLNPRLPPQQRKTTMTT 326
           PPVL P LPP Q  T  T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,578,876
Number of Sequences: 5004
Number of extensions: 51258
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)