Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30786
(708 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 83 2e-16
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 83 2e-16
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 82 4e-16
09_02_0567 + 10745172-10745522 28 6.3
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 28 6.3
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 6.3
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 83.4 bits (197), Expect = 2e-16
Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Frame = +1
Query: 511 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIXEFE---DFVQSVD 681
VR ++MEGLLWGASKLVPVGYGI KLQIM I DD VSVD L E E +F+QS D
Sbjct: 179 VRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEFIQSCD 238
Query: 682 IAAFNQNLK 708
I AFN+ K
Sbjct: 239 IVAFNKICK 247
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 398 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 505
+A A K S K KSS+LLDVKPWDDETDM ++E
Sbjct: 141 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMAKLE 176
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 120 YTPSQADVQVFEQVGKAPAANLPHVLRWYNQIAS 221
Y S+ D+ VF + APAA+ +V RWY+ I++
Sbjct: 49 YQASKDDMTVFTSLPSAPAASYVNVTRWYDHISA 82
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 83.0 bits (196), Expect = 2e-16
Identities = 43/66 (65%), Positives = 50/66 (75%), Gaps = 3/66 (4%)
Frame = +1
Query: 511 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVD-LLTEKIXE--FEDFVQSVD 681
VR+++MEGL WGASKLVPVGYGI KLQIM I DD VSVD L+ E + E +FVQS D
Sbjct: 158 VRSVQMEGLTWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEHLTEEPINEFVQSCD 217
Query: 682 IAAFNQ 699
I AFN+
Sbjct: 218 IVAFNK 223
Score = 49.6 bits (113), Expect = 2e-06
Identities = 22/33 (66%), Positives = 25/33 (75%)
Frame = +2
Query: 407 ADKKSKKPALIAKSSILLDVKPWDDETDMKEME 505
A K S K KSS+LLDVKPWDDETDMK++E
Sbjct: 123 ASKASSKKKESGKSSVLLDVKPWDDETDMKKLE 155
Score = 33.1 bits (72), Expect = 0.22
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 49 DVKTAQGLNDLNQYLAEKSYVSGNTL 126
D+ TA GL L Q+L+ K+YVSGN +
Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAI 32
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 82.2 bits (194), Expect = 4e-16
Identities = 43/69 (62%), Positives = 49/69 (71%), Gaps = 3/69 (4%)
Frame = +1
Query: 511 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEKIXEFE---DFVQSVD 681
VR ++MEGLLWGASKLVPVGYGI KLQIM I DD VSVD L E E +++QS D
Sbjct: 163 VRNVKMEGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEDYFYTEPANEYIQSCD 222
Query: 682 IAAFNQNLK 708
I AFN+ K
Sbjct: 223 IVAFNKICK 231
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = +2
Query: 398 KAYADKKSKKPALIAKSSILLDVKPWDDETDMKEME 505
+A A K S K KSS+LLDVKPWDDETDM ++E
Sbjct: 125 RAAAVKASGKKKESGKSSVLLDVKPWDDETDMTKLE 160
>09_02_0567 + 10745172-10745522
Length = 116
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 556 LVPVGYGINKLQIMCVIEDDKVSVDLLTEKIXEFEDFVQSVDIAAFNQN 702
L+ GY K++ DDKV +++ +K ED + VDI+A +N
Sbjct: 68 LMTPGYDEKKVEWRSKKVDDKVWLEVTIKKKAPTEDGTRIVDISAIEEN 116
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 126 PSQADVQVFEQVGKAPA-ANLPHVLRWYNQIASYTPAERKTWSQAPAH*PPVLNPRLPPQ 302
P ++ F KA A + ++ W + + SY+ S++P+ P P PP
Sbjct: 528 PDVIKIETFYHADKAKTEACILDLVLWLHHLISYSRPSNGGRSRSPSRSPVRSPPLTPPH 587
Query: 303 QRKTTMTTT 329
Q TT +++
Sbjct: 588 QVPTTTSSS 596
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 449 SILLDVKPWDDETDMKEMENKYALLKWKAFSGEPPN 556
S LLD DDE KEM+ K A K K +G+ P+
Sbjct: 1131 SDLLDYINPDDELKAKEMQKKQARAKIKGRAGQNPS 1166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,603
Number of Sequences: 37544
Number of extensions: 352579
Number of successful extensions: 898
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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