Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30783
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    73   4e-14
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   4.3  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    26   5.7  
SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    25   7.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    25   9.9  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   9.9  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 72.9 bits (171), Expect = 4e-14
 Identities = 38/76 (50%), Positives = 49/76 (64%)
 Frame = +3

Query: 252 IVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQ 431
           I A+L+E  P++V VF+ N    +K IL  FK+  F+ GESMD D MV +M YR+ DG  
Sbjct: 95  IKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYRE-DGI- 152

Query: 432 IPIMMFFKHGLEEEKF 479
            P M+FFK GL  EKF
Sbjct: 153 TPYMIFFKDGLVSEKF 168



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +2

Query: 5   SDTYKMKLVDEVIYEVTGRLVTRAQ-GDIQIEGFNPS 112
           SD Y +K VD+++YE   ++VT  Q GD+ I G NPS
Sbjct: 15  SDAYDLKEVDDIVYEADCQMVTVKQGGDVDI-GANPS 50



 Score = 35.1 bits (77), Expect = 0.009
 Identities = 19/46 (41%), Positives = 29/46 (63%)
 Frame = +1

Query: 118 EEADEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKL 255
           E+A+E  +   E+  ++V + RL  T +F DKKSY  Y+K YMK +
Sbjct: 52  EDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAI 95


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -1

Query: 435 VFAYHQSLYIPSWQPC-HHN 379
           V A+ Q L++P W PC  HN
Sbjct: 336 VVAFTQGLFLPRWLPCIKHN 355


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = +2

Query: 50  VTGRLVTRAQGDIQIEGFNPSGLKRLTRARTRPS 151
           V   +VT ++GD +++G  P   + +TR+  + S
Sbjct: 568 VLSPVVTASEGDFELDGITPERQQTMTRSTYQES 601


>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 359 ELKFLKPAEDVFHYFVHVCFKYFNLVR 279
           +  FLKP   ++ YF+ +  +Y +L+R
Sbjct: 175 QFDFLKPNNALYPYFMRIVQQYTSLIR 201


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 478 NFSSSRPCLKNIMIGICVPSKSLY 407
           NFS+ R CL+N ++  CVP   +Y
Sbjct: 795 NFSNYRDCLENCVLP-CVPFLGVY 817


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 243 YEKIVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 413
           +  I+ K   KAP +   F++  N   K  +  FK+  +      D D +V + +++
Sbjct: 584 FMSIIGKWYYKAPKEFATFESAKNLNGKSFVDNFKDRYYM--YKQDIDNVVGLKDFK 638


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,762,523
Number of Sequences: 5004
Number of extensions: 56122
Number of successful extensions: 148
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)