Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30783
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    59   3e-09
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    33   0.27 
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534...    28   7.8  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 59.3 bits (137), Expect = 3e-09
 Identities = 32/81 (39%), Positives = 47/81 (58%)
 Frame = +3

Query: 234 QRLYEKIVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYR 413
           +R  + + AKL+    ++ E FK N+    K +LG+ K+LQFF GESM  DG +    Y+
Sbjct: 92  KRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKLKDLQFFVGESMHDDGGLVFAYYK 148

Query: 414 DFDGTQIPIMMFFKHGLEEEK 476
             DG   P  ++F HGL+E K
Sbjct: 149 --DGATDPTFLYFSHGLKEVK 167



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +1

Query: 127 DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKL 255
           DEG D      VDIV   RL E   F DKK +  ++K Y+K L
Sbjct: 57  DEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMKRYIKNL 98


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
 Frame = -2

Query: 407 FHHGNHAITIHGLPSKEL----KFLKPAEDVFHYFVHVCFKYFNLVRRL 273
           FHH  H   ++  PSK+L    ++L+     FH F ++C++Y  + R+L
Sbjct: 245 FHHMLHLFQMYLKPSKKLVEGSQYLERGR-YFHSFANICYRYLKIGRKL 292


>09_04_0741 -
           19852339-19852497,19853185-19853246,19853352-19853415,
           19853561-19853614,19853744-19853890,19854460-19854564,
           19854651-19854794,19854987-19855093,19855613-19855712,
           19855804-19855833,19856492-19856608,19856705-19856828,
           19857143-19857189,19857272-19857400,19857777-19857852,
           19858446-19858543,19858630-19858671,19858811-19859044
          Length = 612

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 432 FAYHQSLYIPSWQPC-HHNPWTPQ*RTEVP 346
           F YH  +Y+ SW  C H N ++ Q +  +P
Sbjct: 264 FLYHGRMYVSSWHICFHSNVFSKQIKVMLP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,260,832
Number of Sequences: 37544
Number of extensions: 338136
Number of successful extensions: 794
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)