Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30783
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical p...    52   5e-07
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z79754-10|CAB02099.1|  181|Caenorhabditis elegans Hypothetical
           protein F25H2.11 protein.
          Length = 181

 Score = 51.6 bits (118), Expect = 5e-07
 Identities = 30/88 (34%), Positives = 49/88 (55%), Gaps = 7/88 (7%)
 Frame = +3

Query: 234 QRLYEKIVAKLEEKAPDQVEV--FKTNMNKVMKDILG--RFKELQFFTGESMDC---DGM 392
           ++  + ++  +E+   D+ +V  FK  +   +  +L   RFK L FF GE       +G 
Sbjct: 93  KKFMKNVIDHMEKNNRDKADVDAFKKKIQGWVVSLLAKDRFKNLAFFIGERAAEGAENGQ 152

Query: 393 VAMMEYRDFDGTQIPIMMFFKHGLEEEK 476
           VA++EYRD DGT++P +M  K  + EEK
Sbjct: 153 VAIIEYRDVDGTEVPTLMLVKEAIIEEK 180



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = +1

Query: 127 DEGTDSAVESGVDIVLNHRLVETYAFGDKKSYTLYLKDYMKKL 255
           D+G+D  VE G+DIVLNH+LVE   + D   +  Y+K +MK +
Sbjct: 57  DDGSDEHVERGIDIVLNHKLVEMNCYEDASMFKAYIKKFMKNV 99



 Score = 44.4 bits (100), Expect = 7e-05
 Identities = 18/36 (50%), Positives = 27/36 (75%)
 Frame = +2

Query: 5   SDTYKMKLVDEVIYEVTGRLVTRAQGDIQIEGFNPS 112
           SD++ MKLVD+++YE  G+ V R +G+I + G NPS
Sbjct: 15  SDSFPMKLVDDLVYEFKGKHVVRKEGEIVLAGSNPS 50


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 317 FVHVCFKYFNLVRRLLFQFCYNFF 246
           F+++C +Y    RR L  FCY  F
Sbjct: 137 FIYLCIEYLPTGRRYLMMFCYILF 160


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,172,504
Number of Sequences: 27780
Number of extensions: 309602
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)