Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30782
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    50   2e-07
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    27   1.6  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   4.8  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    25   8.4  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     25   8.4  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 50.0 bits (114), Expect = 2e-07
 Identities = 22/76 (28%), Positives = 42/76 (55%)
 Frame = +1

Query: 271 NDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPK 450
           ND     +++ F  E  +GIK ++T+   + + N    I++    M+PSA + +  +  +
Sbjct: 65  NDSNKGTIYIEFAKEPSVGIKEMRTFVHTLGDHNHKTGILIYANSMTPSAAKIIATVTGQ 124

Query: 451 YILEQFLESXLLINIT 498
           + +E F ES L++NIT
Sbjct: 125 FTIETFQESDLIVNIT 140



 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 19/27 (70%), Positives = 21/27 (77%)
 Frame = +2

Query: 122 KTVMQLCHDRGYLVTQDELDQTLEQFK 202
           KT  QL HDRGY V+Q ELD TL+QFK
Sbjct: 16  KTAHQLVHDRGYGVSQAELDLTLDQFK 42


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
 Frame = +1

Query: 358 MQEENIHRAIV--VVQAGMSP--SAKQSLVDMAPKYILEQFLE 474
           + + N+HR I+    + GM    SAKQ L D+ P  I+  +LE
Sbjct: 78  VDKSNLHRQIIHSTSKQGMHKAISAKQFLEDLNPNVIINTYLE 120


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 428 DCLADGDIPACTTTIAL*IFSSCILVQYVFIVFIPILAS 312
           D L +  +PA + T+   +FSS +    +F+VF+ ++ S
Sbjct: 586 DILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNS 624


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 470 RNCSRMYLGAISTSDCLADGDIP 402
           R C R     +++ DC++D D+P
Sbjct: 356 RPCGRCRDAGLNSEDCISDDDMP 378


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -2

Query: 132 ITVLRXYARVCKFLRHHPCFIIYLKLINPF--PTNDNF 25
           +T L     +  FL H P F+  L++ +P+  P+  NF
Sbjct: 517 MTCLAICETMLAFLNHFPLFVTMLRIKDPYRIPSGLNF 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,381
Number of Sequences: 5004
Number of extensions: 41738
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)