Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30782
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1059 - 34156139-34156238,34157113-34157189,34158146-341582... 79 2e-15
04_04_0314 - 24328019-24328144,24329027-24329062,24329780-243298... 74 7e-14
12_01_0261 - 1917149-1917274,1917809-1917922,1918155-1918331,191... 38 0.003
11_01_0263 - 1998399-1998524,1999055-1999168,1999400-1999576,200... 38 0.003
11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959... 27 6.3
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 27 6.3
03_02_0488 - 8824980-8825267,8825364-8827775 27 6.3
02_05_0840 - 32118332-32118376,32118420-32118531,32119074-321191... 27 8.4
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 27 8.4
>01_06_1059 -
34156139-34156238,34157113-34157189,34158146-34158259,
34158390-34158569,34159312-34159524
Length = 227
Score = 79.0 bits (186), Expect = 2e-15
Identities = 35/74 (47%), Positives = 54/74 (72%)
Frame = +1
Query: 274 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 453
+DP+DQ++VFFP++ K+G+K IK Y M+ EN+ RA++V+Q ++P A+ L ++ PK
Sbjct: 66 NDPSDQIYVFFPNDDKVGMKHIKKYVEMMKAENVSRAVLVLQQNLTPFARSFLQELEPKI 125
Query: 454 ILEQFLESXLLINI 495
LE F E+ LLINI
Sbjct: 126 HLEIFQEAELLINI 139
Score = 36.3 bits (80), Expect = 0.014
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 107 LAYXRKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 217
L R+TVMQ+ DRGYLV + EL F ++G+
Sbjct: 15 LVRIRRTVMQMLRDRGYLVVEHELAMGRRDFLRKYGE 51
>04_04_0314 -
24328019-24328144,24329027-24329062,24329780-24329893,
24329997-24330176,24330313-24330510
Length = 217
Score = 73.7 bits (173), Expect = 7e-14
Identities = 32/74 (43%), Positives = 54/74 (72%)
Frame = +1
Query: 274 DDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKY 453
D+ DQ++VFFP +AK G+KTI++Y RM++E++ I+VVQ +S A+ ++ +++ K+
Sbjct: 61 DNGADQIYVFFPKDAKPGVKTIRSYVERMKQESVFNGILVVQQALSAFARSAVQEVSQKF 120
Query: 454 ILEQFLESXLLINI 495
LE F E+ LL+NI
Sbjct: 121 HLEVFQEAELLVNI 134
Score = 39.1 bits (87), Expect = 0.002
Identities = 17/33 (51%), Positives = 23/33 (69%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGD 217
R+TVMQ+ DRGYLVT+ ++D F +FGD
Sbjct: 14 RRTVMQMLRDRGYLVTELDIDLPRGDFVARFGD 46
>12_01_0261 -
1917149-1917274,1917809-1917922,1918155-1918331,
1919075-1919341
Length = 227
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 241
R+T M++ DRGY V + E+ +TL +F+ + +KP +R A
Sbjct: 37 RRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/74 (25%), Positives = 45/74 (60%)
Frame = +1
Query: 277 DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI 456
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 85 DPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFK 143
Query: 457 LEQFLESXLLINIT 498
++ F + LL+NIT
Sbjct: 144 VDIFQATDLLVNIT 157
>11_01_0263 -
1998399-1998524,1999055-1999168,1999400-1999576,
2000321-2000587
Length = 227
Score = 38.3 bits (85), Expect = 0.003
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPA 241
R+T M++ DRGY V + E+ +TL +F+ + +KP +R A
Sbjct: 37 RRTAMEMLRDRGYSVPEAEIARTLPEFRAWWAEKPGIERLA 77
Score = 38.3 bits (85), Expect = 0.003
Identities = 19/74 (25%), Positives = 45/74 (60%)
Frame = +1
Query: 277 DPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYI 456
DP+ ++ + F + I TI+ + +EEN+ R ++++Q+ + A++++ ++ K+
Sbjct: 85 DPSKKVQLVFCPPEPVKIATIREIYLQTKEENLSRLVLILQSKILSRAREAIKEIF-KFK 143
Query: 457 LEQFLESXLLINIT 498
++ F + LL+NIT
Sbjct: 144 VDIFQATDLLVNIT 157
>11_06_0060 -
19695338-19695477,19695641-19695734,19695818-19695973,
19696109-19696168,19696384-19696602,19696607-19697036,
19698428-19698747
Length = 472
Score = 27.5 bits (58), Expect = 6.3
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 295 FVFFPDEAKIGIKTIKTYCTRMQEENIHRAI 387
F P + GI +K++C+R + +HR++
Sbjct: 440 FAIEPSSLEDGIDRLKSFCSRHSKPKVHRSL 470
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 27.5 bits (58), Expect = 6.3
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +2
Query: 266 LIMMIQRIRCLFSFLMXXXXXXXXXRHIVQECKKRIFIGLLLLYRRECHHQLNSH 430
L+ IQRI +F R+++Q K+ + L RR+CHH L+S+
Sbjct: 143 LLHQIQRIDSVFVTYRYDLNSTEAERNVIQTNKRNDYEKL----RRKCHHVLHSY 193
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +1
Query: 265 AHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQS 429
A N + DQ+ E ++ + K+ C + ++ ++HR V+V + PS+++S
Sbjct: 615 AGNKNKKDQLVYNIVGEMRVSHR--KSRCYQAEKNHLHREFVLVGSEQLPSSEES 667
>02_05_0840 -
32118332-32118376,32118420-32118531,32119074-32119196,
32119267-32119379,32119460-32119605,32120048-32120162,
32120360-32120473
Length = 255
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 122 KTVMQLCHDRGYLVTQDELDQTL 190
KT+ Q+C + Y+V +DE+ QT+
Sbjct: 34 KTLEQICRECFYVVFEDEIHQTI 56
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 27.1 bits (57), Expect = 8.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 192 SKVWSNSSCVTKYPRSWHNCITVLRXYARVCKFLRHHPCFIIYLKLI 52
SK W N+S YP+S + V C F + C +I L+L+
Sbjct: 70 SKTWVNASDSNSYPKSSYPNFPVSNLTCD-CSFKNNTECHVISLELM 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,526,382
Number of Sequences: 37544
Number of extensions: 239151
Number of successful extensions: 537
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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