Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30782
(499 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein. 148 1e-35
J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD su... 146 3e-35
BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DN... 146 3e-35
BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DN... 146 3e-35
AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein. 146 3e-35
Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein. 34 0.32
AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein. 34 0.32
BC111794-1|AAI11795.1| 744|Homo sapiens DCST2 protein protein. 30 5.1
AL451085-31|CAI13268.2| 773|Homo sapiens DC-STAMP domain contai... 30 5.1
AK097468-1|BAC05065.1| 604|Homo sapiens protein ( Homo sapiens ... 30 5.1
AK057496-1|BAB71511.1| 639|Homo sapiens protein ( Homo sapiens ... 30 5.1
>D38251-1|BAA07406.1| 210|Homo sapiens RPB5 protein.
Length = 210
Score = 148 bits (358), Expect = 1e-35
Identities = 69/81 (85%), Positives = 74/81 (91%)
Frame = +1
Query: 256 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 435
VLVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLV
Sbjct: 60 VLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
Query: 436 DMAPKYILEQFLESXLLINIT 498
DMAPKYILEQFLE LLINIT
Sbjct: 120 DMAPKYILEQFLEQELLINIT 140
Score = 89.4 bits (212), Expect = 6e-18
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDL 253
RKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL
Sbjct: 14 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDL 58
>J04965-1|AAA62401.1| 210|Homo sapiens RNA polymerase II 23kD
subunit protein.
Length = 210
Score = 146 bits (355), Expect = 3e-35
Identities = 68/81 (83%), Positives = 74/81 (91%)
Frame = +1
Query: 256 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 435
VLVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLV
Sbjct: 60 VLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
Query: 436 DMAPKYILEQFLESXLLINIT 498
DMAPKYILEQFL+ LLINIT
Sbjct: 120 DMAPKYILEQFLQQELLINIT 140
Score = 89.4 bits (212), Expect = 6e-18
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDL 253
RKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL
Sbjct: 14 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDL 58
>BC034144-1|AAH34144.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 146 bits (355), Expect = 3e-35
Identities = 68/81 (83%), Positives = 74/81 (91%)
Frame = +1
Query: 256 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 435
VLVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLV
Sbjct: 60 VLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
Query: 436 DMAPKYILEQFLESXLLINIT 498
DMAPKYILEQFL+ LLINIT
Sbjct: 120 DMAPKYILEQFLQQELLINIT 140
Score = 89.4 bits (212), Expect = 6e-18
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDL 253
RKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL
Sbjct: 14 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDL 58
>BC004441-1|AAH04441.1| 210|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide E, 25kDa protein.
Length = 210
Score = 146 bits (355), Expect = 3e-35
Identities = 68/81 (83%), Positives = 74/81 (91%)
Frame = +1
Query: 256 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 435
VLVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLV
Sbjct: 60 VLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
Query: 436 DMAPKYILEQFLESXLLINIT 498
DMAPKYILEQFL+ LLINIT
Sbjct: 120 DMAPKYILEQFLQQELLINIT 140
Score = 89.4 bits (212), Expect = 6e-18
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDL 253
RKT+MQLCHDRGYLVTQDELDQTLE+FK QFGDKPSE RP R+DL
Sbjct: 14 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQFGDKPSEGRPRRTDL 58
>AC004151-2|AAC03238.1| 210|Homo sapiens RPB5_Human protein.
Length = 210
Score = 146 bits (355), Expect = 3e-35
Identities = 68/81 (83%), Positives = 74/81 (91%)
Frame = +1
Query: 256 VLVAHNDDPTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLV 435
VLVAHNDDPTDQMFVFFP+E K+GIKTIK YC RMQEENI RA++VVQ GM+PSAKQSLV
Sbjct: 60 VLVAHNDDPTDQMFVFFPEEPKVGIKTIKVYCQRMQEENITRALIVVQQGMTPSAKQSLV 119
Query: 436 DMAPKYILEQFLESXLLINIT 498
DMAPKYILEQFL+ LLINIT
Sbjct: 120 DMAPKYILEQFLQQELLINIT 140
Score = 86.2 bits (204), Expect = 6e-17
Identities = 38/45 (84%), Positives = 41/45 (91%)
Frame = +2
Query: 119 RKTVMQLCHDRGYLVTQDELDQTLEQFKEQFGDKPSEKRPARSDL 253
RKT+MQLCHDRGYLVTQDELDQTLE+FK Q GDKPSE RP R+DL
Sbjct: 14 RKTIMQLCHDRGYLVTQDELDQTLEEFKAQSGDKPSEGRPRRTDL 58
>Z82203-1|CAI42695.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AL672138-1|CAI41508.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AL158201-3|CAI40982.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AL157700-1|CAD18899.2| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AJ248245-1|CAB96181.1| 802|Homo sapiens oligophrenin-1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AJ001189-1|CAA04579.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>AB102656-1|BAC81125.1| 802|Homo sapiens oligophrenin 1 protein.
Length = 802
Score = 33.9 bits (74), Expect = 0.32
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 280 PTDQMFVFFPDEAKIGIKTIKTYCTRMQEENIHRAIVVVQAGMSPSAKQSLVDMAPKYIL 459
PT + +++ ++ +GI +K YC Q E + + + P AKQ +D+ KY +
Sbjct: 266 PTIEGYLYTQEKWALGISWVKYYC---QYEKETKTLTMTPMEQKPGAKQGPLDLTLKYCV 322
Query: 460 EQFLES 477
+ ES
Sbjct: 323 RRKTES 328
>BC111794-1|AAI11795.1| 744|Homo sapiens DCST2 protein protein.
Length = 744
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 210 NCSLNCSKVWSNS--SCVTKYPRSWHNCITVLRXYARVCKFLRHHPCFIIYLKLINPF 43
N L C++V+ ++ SC+ P+++H C ++ +C F + K I PF
Sbjct: 204 NPYLKCARVFDDAKDSCMMVIPQAYHLCYVLMPFKLALCGLASLVQVFCVIPKYIQPF 261
>AL451085-31|CAI13268.2| 773|Homo sapiens DC-STAMP domain
containing 2 protein.
Length = 773
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 210 NCSLNCSKVWSNS--SCVTKYPRSWHNCITVLRXYARVCKFLRHHPCFIIYLKLINPF 43
N L C++V+ ++ SC+ P+++H C ++ +C F + K I PF
Sbjct: 204 NPYLKCARVFDDAKDSCMMVIPQAYHLCYVLMPFKLALCGLASLVQVFCVIPKYIQPF 261
>AK097468-1|BAC05065.1| 604|Homo sapiens protein ( Homo sapiens
cDNA FLJ40149 fis, clone TESTI2013671. ).
Length = 604
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 210 NCSLNCSKVWSNS--SCVTKYPRSWHNCITVLRXYARVCKFLRHHPCFIIYLKLINPF 43
N L C++V+ ++ SC+ P+++H C ++ +C F + K I PF
Sbjct: 31 NPYLKCARVFDDAKDSCMMVIPQAYHLCYVLMPFKLALCGLASLVQVFCVIPKYIQPF 88
>AK057496-1|BAB71511.1| 639|Homo sapiens protein ( Homo sapiens
cDNA FLJ32934 fis, clone TESTI2007480. ).
Length = 639
Score = 29.9 bits (64), Expect = 5.1
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -2
Query: 210 NCSLNCSKVWSNS--SCVTKYPRSWHNCITVLRXYARVCKFLRHHPCFIIYLKLINPF 43
N L C++V+ ++ SC+ P+++H C ++ +C F + K I PF
Sbjct: 204 NPYLKCARVFDDAKDSCMMVIPQAYHLCYVLMPFKLALCGLASLVQVFCVIPKYIQPF 261
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,940,135
Number of Sequences: 237096
Number of extensions: 1356579
Number of successful extensions: 2579
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2579
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -