Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30779
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    28   0.92 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   6.5  

>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 18/74 (24%), Positives = 32/74 (43%)
 Frame = +2

Query: 32  KNEFRQCGVVNSHSSNGVLGGDRYSETSYDLNQAKELFEIFVKEHNREYKDDADRELHYX 211
           K+E     + N+  +   LG ++YS T        E FE+F K++  +   + + E+   
Sbjct: 74  KSEISTDYLNNAFQTIESLGAEKYSVTMEPCTYTDEKFEVF-KKYQMQVHLEKEEEITKK 132

Query: 212 SFKKHLAEINXLNE 253
            F + L      NE
Sbjct: 133 GFSRFLCNSPLFNE 146


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 81  ASSAETDTPRHLMTSIKPKNCSKFSSKNIT 170
           A S+  +TP  L +S KP + SK S+K+++
Sbjct: 388 ALSSSLETPSVLTSSYKPSSSSKVSAKSVS 417


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 98   RYSETSYDLNQAKELFEIFVKEHNREYKD 184
            +YSET  +LN+ +    IF KE   EY+D
Sbjct: 1054 KYSETESELNKKEAELVIFQKEIT-EYRD 1081


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,883,717
Number of Sequences: 5004
Number of extensions: 35586
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)