Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30779
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733 34 0.075
10_07_0172 + 13804803-13805293,13805423-13805537,13805766-138058... 33 0.099
01_06_1677 + 39092268-39092306,39092395-39092447,39094259-390943... 30 1.2
12_01_1008 - 10238721-10238777,10238889-10239307,10240418-102405... 29 2.1
04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016 29 2.8
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 28 3.7
05_05_0319 - 24080914-24080929,24082320-24082621,24082666-240827... 28 3.7
06_01_0446 - 3147007-3147111,3147215-3147367,3147445-3147497,314... 28 4.9
12_01_0990 + 10052430-10052895,10053633-10054219 27 6.5
04_01_0548 + 7103540-7103972,7104081-7104667 27 6.5
10_08_0654 - 19616426-19616656,19617046-19617249,19617654-196178... 27 8.6
05_05_0362 + 24415257-24415481,24415585-24415835,24416659-244167... 27 8.6
>07_03_1245 + 25154586-25155040,25155519-25155604,25155690-25155733
Length = 194
Score = 33.9 bits (74), Expect = 0.075
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +2
Query: 95 DRYSETSYDLNQAKELFEIFVKEHNREYKDDADRELHYXSFKKHLAEINXLN 250
D + D K FE ++KEH R Y ++ Y +FKK + IN LN
Sbjct: 52 DEDGNNAVDEPAMKAKFEDWMKEHGRIYITKKEKAHRYENFKKAMKGINELN 103
>10_07_0172 +
13804803-13805293,13805423-13805537,13805766-13805831,
13805921-13806009,13806103-13806193,13806312-13806458,
13806575-13806667,13806745-13806846,13806957-13807541,
13808523-13808813,13808866-13808937
Length = 713
Score = 33.5 bits (73), Expect = 0.099
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +1
Query: 235 DKPIERENPYTTFGINKFA---DYTPEEQQSRLGLRLPAKKT*VLRLQSIGMLFQTK*MY 405
DK P T G ++FA D TPE+ G+ P + +RLQ + F+T+
Sbjct: 94 DKESCSSKPNATAGASRFALAGDQTPEDSPVIAGVASPKHQAAAVRLQKVYKSFRTRRQL 153
Query: 406 CDC 414
DC
Sbjct: 154 ADC 156
>01_06_1677 +
39092268-39092306,39092395-39092447,39094259-39094350,
39094435-39094646,39095196-39095207
Length = 135
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 107 ETSYDLNQA-KELFEIFVKEHNREYKDDADRELHYXSFKKHLAEINXLN 250
+ S D QA K F+ ++ + NR YKD+A++ + FK + + N
Sbjct: 81 KVSEDEEQALKVRFQEWMNKFNRNYKDEAEKAYRFEVFKSTVQYVEKFN 129
>12_01_1008 -
10238721-10238777,10238889-10239307,10240418-10240548,
10240678-10240781,10241299-10241739
Length = 383
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 65 SHSS-NGVLGGDRYSETSYDLNQAKELFEIFVK 160
SHS +G+LGG S S+D+ +ELF+ F K
Sbjct: 349 SHSQMSGLLGGILRSSESHDMKMLQELFKTFRK 381
>04_01_0537 + 6970887-6971319,6971428-6971540,6971552-6972016
Length = 336
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 146 EIFVKEHNREYKDDADRELHYXSFKKHLAEINXLN 250
E ++ ++ R YKDDA++ + FK ++A I N
Sbjct: 38 ERWMAQYGRMYKDDAEKARRFEVFKANVAFIESFN 72
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = +3
Query: 15 LLIHCAKMNFVSVALLIATVVMASSAETDTPRHLMT 122
L+IHC +MN+V + V + P H T
Sbjct: 410 LIIHCGRMNYVEAEAMKKPVAYLNPCRISKPNHTYT 445
>05_05_0319 -
24080914-24080929,24082320-24082621,24082666-24082787,
24083189-24083534
Length = 261
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +2
Query: 98 RYSETSYDLNQAKELFEIFVKEHNREYKDDADRELHYXSFKK 223
+ + D K F+ ++KEHNR Y + ++ Y FK+
Sbjct: 171 KQQDVKVDEATMKARFQDWMKEHNRSYSTEEEKARCYEIFKE 212
>06_01_0446 -
3147007-3147111,3147215-3147367,3147445-3147497,
3147670-3147988,3148754-3148892,3149141-3149222,
3149711-3149789,3150135-3150314,3150811-3151070,
3151192-3151294,3151469-3151609,3151797-3151870,
3153536-3153635,3154108-3154167,3154381-3154428,
3154519-3154610,3155023-3155071,3155810-3155879,
3156408-3156505,3157288-3157347
Length = 754
Score = 27.9 bits (59), Expect = 4.9
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 30 AKMNFVSVALLIATVVMASSAETDTPRHLMTSIKPKNCSKFSSK 161
A M F+S+ + +AT + S +T T H+ + +NC+ S++
Sbjct: 113 ADMEFISMGMKVATRAVYSLHKTSTREHI-KKVALRNCNAISAE 155
>12_01_0990 + 10052430-10052895,10053633-10054219
Length = 350
Score = 27.5 bits (58), Expect = 6.5
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 50 CGVVNSHSSNGVLGGDRYSETSYDLNQAKELFEIFVKEHNREYKDDADRELHYXSFKKHL 229
C +V +SS+G E D A E ++ +H R YKD A++ FK ++
Sbjct: 14 CCIVCLYSSSGGAIVAAARELGGDAAMAAR-HERWMAQHGRVYKDAAEKARRLEVFKANV 72
Query: 230 AEINXLN 250
A I N
Sbjct: 73 AFIESFN 79
>04_01_0548 + 7103540-7103972,7104081-7104667
Length = 339
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 146 EIFVKEHNREYKDDADRELHYXSFKKHLAEINXLN 250
E ++ ++ R Y+DDA++ + FK ++A I N
Sbjct: 38 ERWMAQYGRVYRDDAEKARRFEVFKANVAFIESFN 72
>10_08_0654 -
19616426-19616656,19617046-19617249,19617654-19617824,
19619617-19620411
Length = 466
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -2
Query: 400 FISFGIAFR*TEVAELMSS*QAASIPTCSAVPQEYNQQI 284
F+++G + R TE ++ +S A+ P C+ V NQ+I
Sbjct: 222 FVAWGGSIRRTEGFKMSNSLNASRFPFCAVVMASTNQRI 260
>05_05_0362 +
24415257-24415481,24415585-24415835,24416659-24416755,
24417272-24417820,24418029-24418482,24418747-24418860,
24418940-24419023,24419499-24420067
Length = 780
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 338 LLRRHKFCDFSLSECYSKRNKCIVTACKMFKIYRI 442
L R + DFS+ C S N VT K K Y +
Sbjct: 716 LAREKEINDFSIKRCISVLNSMDVTKAKKVKAYTV 750
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,080,056
Number of Sequences: 37544
Number of extensions: 196877
Number of successful extensions: 504
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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