Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30779
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical ...    35   0.029
Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>AL021497-4|CAA16407.1|  386|Caenorhabditis elegans Hypothetical
           protein Y51A2D.8 protein.
          Length = 386

 Score = 35.1 bits (77), Expect = 0.029
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = +2

Query: 143 FEIFVKEHNREYKDDADRELHYXSFKKHLAEINXLNER 256
           FE F K++NR+YKD+++ +  + +F K    ++ LN +
Sbjct: 43  FEDFKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAK 80



 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 265 TTFGINKFADYTPEEQQSRLGLRLPAKKT 351
           T FGINKF+D +  E   RL   +P+  T
Sbjct: 88  TQFGINKFSDLSTAEFHGRLSNVVPSNNT 116


>Z70750-3|CAA94738.1|  374|Caenorhabditis elegans Hypothetical
           protein C50F4.3 protein.
          Length = 374

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +2

Query: 95  DRYSETSYDLNQAKEL---FEIFVKEHNREYKDDADRELHYXSFKKHLAEINXLNE 253
           D + E + D N  ++L   FE F+ ++ R YKD+ +++  +  F      +  +N+
Sbjct: 28  DSFFEINIDRNNPEKLYKEFEDFIVKYKRNYKDEIEKKFRFQQFVATHNRVGKMNK 83


>Z30973-3|CAA83222.1|  420|Caenorhabditis elegans Hypothetical
           protein B0284.4 protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
 Frame = -2

Query: 124 EVIRCLGVSVSAEDAITTV--AIN--NATLTKFIFAQCINSGTGL 2
           EV+RC  V+   ++AITTV  ++N   A+L +  F  CI   T L
Sbjct: 311 EVLRCHAVACLIQNAITTVRNSLNQFGASLQENTFTNCIGYYTDL 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,295,034
Number of Sequences: 27780
Number of extensions: 197307
Number of successful extensions: 524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)