Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30778
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos...    26   3.9  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   6.8  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.8  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.0  

>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
           Caf16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 280

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 169 LSAQGNDPRRDELATFNYCGCGWPQHMLVPRALKPA 276
           +S  G DP R+  + F Y G  W  + ++ R +  A
Sbjct: 61  ISVGGKDPFRESSSAFVYLGTEWVNNPVIHRDMSVA 96


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -1

Query: 89  QDSDESVHFNTHLALVREYPGDIALVE 9
           +D DE  + N    L+ +YP DI   E
Sbjct: 217 EDEDEDNNNNNRWLLIEQYPSDIVAYE 243


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
 Frame = +3

Query: 417 GFPFDRPSSSATSLQDFILPNM---GLQDITIQFKTSP 521
           G P         SL  FILPNM    + D+ + FK  P
Sbjct: 710 GTPLQNNLKELVSLLAFILPNMFDSDMDDLDVIFKAKP 747


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +2

Query: 200 TNSLPSITAAAAGLSTCSS 256
           TN+LPS++A++  + TC +
Sbjct: 120 TNTLPSVSASSQSVETCET 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,800,290
Number of Sequences: 5004
Number of extensions: 58659
Number of successful extensions: 153
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)