Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30778
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    29   3.0  
02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775           29   3.0  
12_01_0016 + 125052-127145                                             29   4.0  
11_01_0016 + 126373-128004                                             28   5.3  
08_02_0488 + 17706902-17706989,17707112-17707158,17707244-177073...    28   7.0  
08_02_0377 + 16481232-16481361,16482501-16482547,16482634-164827...    28   7.0  
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939...    27   9.3  
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696...    27   9.3  
03_05_0751 - 27389910-27392105                                         27   9.3  

>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 121  TDRTILFSPAFRTVTNLSISIHILRWSENI 32
            TD ++L +PA RT+     SIH+L  SE++
Sbjct: 2680 TDSSVLQAPADRTIQTSPSSIHVLDASESV 2709


>02_01_0747 - 5561298-5562005,5563080-5563185,5563759-5563775
          Length = 276

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 276 CRLQCPWDEHVLRPAAAAVIEGS 208
           C L C W +H L  A+A V+E S
Sbjct: 55  CELACQWAKHALAQASAYVVEDS 77


>12_01_0016 + 125052-127145
          Length = 697

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 191 HDATNSLPSITAAAAGLSTCSSQG 262
           H+ TNSLP   A  A LS C++ G
Sbjct: 194 HNKTNSLPDTAAFNAALSACANAG 217


>11_01_0016 + 126373-128004
          Length = 543

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 191 HDATNSLPSITAAAAGLSTCSSQG 262
           H+ TNSLP   A  A LS C+  G
Sbjct: 40  HNKTNSLPDTAAFNAALSACADAG 63


>08_02_0488 +
           17706902-17706989,17707112-17707158,17707244-17707321,
           17707436-17707506,17707616-17707697
          Length = 121

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 456 LQDFILPNMGLQDITIQFKTSPNLTHGTLPCLFKMSQN 569
           + D+ +P+M   D+ ++ K SP L H  LP +   S N
Sbjct: 53  VSDYCMPDMTGYDLLMEVKKSPKLAH--LPVVIASSDN 88


>08_02_0377 +
           16481232-16481361,16482501-16482547,16482634-16482711,
           16482826-16482896,16483005-16483086
          Length = 135

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 456 LQDFILPNMGLQDITIQFKTSPNLTHGTLPCLFKMSQN 569
           + D+ +P M   D+ ++ K SP L H  LP +   S N
Sbjct: 67  VSDYCMPEMTGYDLLMEVKKSPRLVH--LPVIIASSDN 102


>11_04_0364 - 16791774-16792490,16792545-16793561,16793856-16793920,
            16794787-16796964,16797065-16797322,16799815-16800172
          Length = 1530

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 493  TSLFNSKRHRT*PTEPSHVCLKC 561
            TS+FNS    T PT P+ V  KC
Sbjct: 1080 TSIFNSASSSTPPTSPTPVLAKC 1102


>09_04_0308 +
           16567361-16568854,16568946-16569068,16569372-16569649,
           16570316-16571924,16572363-16573781
          Length = 1640

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 493 TSLFNSKRHRT*PTEPSHVCLKC 561
           TS+FNS    T PT P+ V  KC
Sbjct: 647 TSIFNSASSSTPPTSPTPVLAKC 669


>03_05_0751 - 27389910-27392105
          Length = 731

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 378 GLKDKKYPDRRAMGFPFDRPSSSATS 455
           G K    PDR+ + +P D PS S+TS
Sbjct: 118 GHKFPPSPDRQLVAWPLDSPSESSTS 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,205,971
Number of Sequences: 37544
Number of extensions: 426952
Number of successful extensions: 1152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)