Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30778
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine nucle...    32   0.29 
AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila so...    32   0.29 
Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>AF251308-1|AAF82360.1| 1413|Caenorhabditis elegans guanine
           nucleotide exchange factorfor RAS protein.
          Length = 1413

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  DERNVPWIFSDQRKMCIEMDRFVTVLNAGENNIVRSVDGVFHNYSVRTDIPR 167
           + R+  ++ +D  K  +E +RF ++  +GE+ +  S+DG     +V+  +P+
Sbjct: 348 ETRHATYVINDNIKALLESERFASLFQSGEHYLGSSLDGQSFRLAVQYVLPQ 399


>AC006692-9|AAF39972.5| 1493|Caenorhabditis elegans Drosophila sos
           homolog protein 1 protein.
          Length = 1493

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 13/52 (25%), Positives = 30/52 (57%)
 Frame = +3

Query: 12  DERNVPWIFSDQRKMCIEMDRFVTVLNAGENNIVRSVDGVFHNYSVRTDIPR 167
           + R+  ++ +D  K  +E +RF ++  +GE+ +  S+DG     +V+  +P+
Sbjct: 348 ETRHATYVINDNIKALLESERFASLFQSGEHYLGSSLDGQSFRLAVQYVLPQ 399


>Z50873-3|CAA90761.4|  531|Caenorhabditis elegans Hypothetical
           protein F17E5.2 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = +3

Query: 318 DRIDQDDGKQLTCVEASSFCGLKDKKYPDRRAMGF--PFDRPSSSATSL---QDFIL--P 476
           D+ID +   ++   E  S+C        D++AM      D+  SS+ +L   QDF+L  P
Sbjct: 146 DKIDLNSDGEVDMAEIKSYCKEMGVNLDDQKAMSIVKKMDQSGSSSVNLNEFQDFMLLYP 205

Query: 477 NMGLQDI 497
           +  ++D+
Sbjct: 206 STDMRDM 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,771,933
Number of Sequences: 27780
Number of extensions: 343642
Number of successful extensions: 812
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)