Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30774
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    27   0.99 
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        26   3.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   4.0  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   5.3  
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    25   7.0  
SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual          24   9.3  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    24   9.3  

>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 27.5 bits (58), Expect = 0.99
 Identities = 15/73 (20%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
 Frame = -3

Query: 422 IDKFIKNLNAF*FQIKQKRSDPGA-MSRTGDV*HHLMAWGLPWQQQSTVTQCCRPLNSVV 246
           ++ F K+ N F   + +    P A + ++G     + +  +PW +   +  C +   + +
Sbjct: 205 VNSFSKSANGFSHNLNRYDISPAAFILKSGSPSLQIHSVEIPWVEPLALADCIQKSGNPI 264

Query: 245 CLCSSGCASCRYS 207
           C   S     RYS
Sbjct: 265 CFLDSAKKPGRYS 277


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = +2

Query: 149 WHW-GSVDSISGSHARFQLSGNSGRKHSRCCTSILRNL 259
           W W GSVD  SG         N  R  S   TS+LR +
Sbjct: 39  WKWYGSVDEDSGYVYLTSKDSNEARSGSLWSTSVLRQV 76


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -1

Query: 100 APCSFNFCSLRA 65
           +PCSF  CSLRA
Sbjct: 62  SPCSFTICSLRA 73


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 331 TSPVLDIAPGSDLFCFIWN*NA 396
           T P+  + P  ++FC IW+ NA
Sbjct: 411 THPLRSVIPLDNIFCNIWSDNA 432


>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 431 LHRIDKFIKNLNAF*FQIKQKRSDPGAMSRTG 336
           LH+I KF  +L +    + +++    AMSR G
Sbjct: 119 LHQIKKFSSDLQSLKSSMGERQKQQAAMSRRG 150


>SPAC9.06c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 326 HHLMAWGLPWQQQSTVTQC 270
           H ++ WG  W++  T  +C
Sbjct: 160 HGVIGWGATWEKSKTQMEC 178


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 128 GRRCCNIWHWGSVDSISGSHARFQLSGNSGRKHSR 232
           G R C    W S+D +S S+A  Q  G      +R
Sbjct: 287 GGRYCETVGWLSIDGLSASNATRQYVGRPVTNETR 321


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,799,192
Number of Sequences: 5004
Number of extensions: 33831
Number of successful extensions: 71
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)