Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30774
(448 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0269 + 16265191-16265472,16265574-16266149 29 1.3
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 29 1.7
01_01_1215 + 9815918-9816218,9816772-9816912,9816988-9817106,981... 28 3.0
12_01_0950 - 9463148-9464358,9465326-9465644 27 5.2
07_01_0479 + 3606663-3607448 27 5.2
04_04_0516 + 25833801-25834046,25834412-25834532,25834636-258348... 27 5.2
03_06_0194 + 32249846-32250562 27 5.2
01_05_0635 - 23847255-23847287,23847397-23848083,23848178-238485... 27 5.2
01_06_0961 + 33383183-33383446,33383568-33383891,33385972-333861... 27 6.9
09_06_0231 + 21733151-21734905 27 9.1
04_04_0499 + 25674024-25674233,25674515-25675072,25675320-256754... 27 9.1
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Frame = -2
Query: 219 LPLFPLS*NRAWEPL---MESTDPQCHILQHRRPRLP 118
LP P W PL M T P C +L++ RPRLP
Sbjct: 139 LPFAPSLVRGRWVPLVGEMARTGPLCLLLENPRPRLP 175
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 29.1 bits (62), Expect = 1.7
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -3
Query: 359 PGAMSRTGDV*HHLMAWGLPWQQQSTVTQCCRPLNSVVCLCSSGCASC 216
PG ++ T D H L LP Q Q ++++C L++V+C SS C +C
Sbjct: 534 PGDIAGT-DTEHQLGL--LPHQMQGSLSKCV--LSTVLCNSSSNCIAC 576
>01_01_1215 +
9815918-9816218,9816772-9816912,9816988-9817106,
9817922-9818191,9818330-9818369,9818519-9818616,
9818745-9818825
Length = 349
Score = 28.3 bits (60), Expect = 3.0
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 182 SHARFQLSGNSGRKHSRCCTS-ILRNLVAGSIVSQLTAAAMVAPTP*GD 325
S + LS +GRK R C+ ++R + SI + LT+AA+V P P GD
Sbjct: 137 SQSIVSLSSFAGRKRIRVCSGFVIRWNDSTSIGTILTSAALVRP-PCGD 184
>12_01_0950 - 9463148-9464358,9465326-9465644
Length = 509
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 81 KLKEHGASSCIKVVNAVGGAVIYGTGGLLTPL 176
K+ + GAS CI V + V+ GT G L P+
Sbjct: 322 KVSDFGASRCIPVDQSGVTTVVQGTRGYLDPM 353
>07_01_0479 + 3606663-3607448
Length = 261
Score = 27.5 bits (58), Expect = 5.2
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -1
Query: 169 VNRPPVPYITAPPTAFTTLMQ 107
++RPP+P ++APP A+ +++
Sbjct: 148 ISRPPMPNLSAPPVAYPQVVR 168
>04_04_0516 +
25833801-25834046,25834412-25834532,25834636-25834821,
25834918-25834944,25836203-25836351,25836553-25836602,
25837181-25837289,25837395-25837532,25838184-25838463,
25838533-25838656,25838994-25839003
Length = 479
Score = 27.5 bits (58), Expect = 5.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 146 IWHWGSVDSISGSHARFQLSGN---SGRKHS 229
++ WGS+D+ H+RF S N +GR H+
Sbjct: 410 VYRWGSLDANHVGHSRFDSSENHMVTGRHHN 440
>03_06_0194 + 32249846-32250562
Length = 238
Score = 27.5 bits (58), Expect = 5.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 95 WGF*LH*GGKRGRRCCNIWHWGSVDSISGSHARFQLSGNSGRK 223
WG G GR W G+V + +G+H R + S + G+K
Sbjct: 142 WGRRFGGGTDIGRLRVQGWRAGAVKNAAGAHGRQRRSSSGGKK 184
>01_05_0635 -
23847255-23847287,23847397-23848083,23848178-23848540,
23848633-23848725,23848820-23848870,23849031-23849304,
23849766-23850595
Length = 776
Score = 27.5 bits (58), Expect = 5.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = +3
Query: 48 LLYLRIARREQKLKEHGASSCIKVVN 125
++++R+ +K K+ G+ SC+K+VN
Sbjct: 207 MVFVRLRPMSRKEKDAGSRSCVKIVN 232
>01_06_0961 +
33383183-33383446,33383568-33383891,33385972-33386130,
33386213-33386288,33387324-33387495,33388618-33388699
Length = 358
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/53 (24%), Positives = 24/53 (45%)
Frame = +2
Query: 158 GSVDSISGSHARFQLSGNSGRKHSRCCTSILRNLVAGSIVSQLTAAAMVAPTP 316
G+ + +G+ AR + ++ RC S+ + + L AAA+V P
Sbjct: 29 GAAERATGAVARVRALARDSERNRRCFVSVGTGRMLAAAFESLAAAALVCMMP 81
>09_06_0231 + 21733151-21734905
Length = 584
Score = 26.6 bits (56), Expect = 9.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -2
Query: 333 CLASPHGVGATMAAAVNCDTMLPAT 259
CL P GVGA CD M PAT
Sbjct: 47 CLRLPLGVGAGGCRVCACDEMDPAT 71
>04_04_0499 +
25674024-25674233,25674515-25675072,25675320-25675415,
25675509-25675601,25675882-25676125,25676239-25676276,
25676377-25676478
Length = 446
Score = 26.6 bits (56), Expect = 9.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -3
Query: 299 WQQQSTVTQCCRPLNSVVCLCSSGCASCR 213
W+ S +TQ +P++S + C SCR
Sbjct: 364 WEDPSRLTQKNKPISSATNASTKKCISCR 392
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,401,183
Number of Sequences: 37544
Number of extensions: 257292
Number of successful extensions: 731
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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