Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30774
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    27   4.7  
AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical ...    27   4.7  
U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical pr...    27   6.2  

>U13643-5|AAA21081.1|   89|Caenorhabditis elegans Hypothetical
           protein T07E3.2 protein.
          Length = 89

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 364 DLFCFIWN*NAFKFLINLSMRCKKKKKK 447
           DLF  I+N     F + L + CKKKK K
Sbjct: 4   DLFVIIFNFCIITFSVYLGIGCKKKKNK 31


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 119  GKRGRRC--CNIWHWGSVDSISGSHARFQLSGN 211
            G +G RC  C   HWGS   + G+  R   +GN
Sbjct: 977  GYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AC024090-3|AAK67220.3|  370|Caenorhabditis elegans Hypothetical
           protein C52E2.6 protein.
          Length = 370

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 169 VNRPPVPYITAPPTAFTTLMQLEAP--CSFNF 80
           V+ PP P +  PP  F  L ++ +   C FNF
Sbjct: 24  VSSPPFPILRLPPKPFVPLFRILSSRICEFNF 55


>U29381-3|AAA68758.2|  617|Caenorhabditis elegans Hypothetical
           protein F35D11.3 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 72  REQKLKEHGASSCIKVVNAVGGAVIYGTGGLLTPLVA 182
           R +K+K +     I     VGG +I  TGGL  PLVA
Sbjct: 211 RNKKIKRY---LMIGAAGGVGGVLIGLTGGLAAPLVA 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,232,275
Number of Sequences: 27780
Number of extensions: 202770
Number of successful extensions: 519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)