Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30772
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   138   5e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   138   6e-34
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    33   0.036
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   3.1  
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          26   4.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.4  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  138 bits (334), Expect = 5e-34
 Identities = 63/84 (75%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKP  HLTAF+GYKAGMTH+VR+ DRP
Sbjct: 5   KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPV-HLTAFLGYKAGMTHIVRDLDRP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSK++K+E +EAVTIIETPPMV V
Sbjct: 64  GSKMHKREILEAVTIIETPPMVVV 87



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 39/80 (48%), Positives = 56/80 (70%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           VVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    +SI +
Sbjct: 89  VVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINR 146

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           + +++ +YCSVVRV+AHTQ+
Sbjct: 147 ELERIKKYCSVVRVLAHTQI 166


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  138 bits (333), Expect = 6e-34
 Identities = 62/84 (73%), Positives = 73/84 (86%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKP  HLTAF+GYKAGMTH+VR+ DRP
Sbjct: 5   KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPV-HLTAFLGYKAGMTHIVRDLDRP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSK++K+E +EAVT+IETPPMV V
Sbjct: 64  GSKMHKREILEAVTVIETPPMVVV 87



 Score = 89.8 bits (213), Expect = 2e-19
 Identities = 39/80 (48%), Positives = 56/80 (70%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           VVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    +SI +
Sbjct: 89  VVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSINR 146

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           + +++ +YCSVVRV+AHTQ+
Sbjct: 147 ELERIKKYCSVVRVLAHTQI 166


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 32.7 bits (71), Expect = 0.036
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +2

Query: 185 SKINKKEXVEAVTIIETPPMVCVVLLDTLRPLMDYALF*LSGRSICLKTVDVASTKTGTN 364
           S++ K + V+     +  P VCV    TL    DYA+   S +S+ LK   V+   T T 
Sbjct: 192 SELFKPKPVKLAPPKKKTPKVCVPGRLTLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTK 251

Query: 365 ARRRLSLKPVRNGRMSLD 418
            RRR +    RN  + L+
Sbjct: 252 KRRRTANTSQRNDGLDLN 269


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -1

Query: 285 SMRGLNVSNNTTQTIGGVSMMVTAST 208
           SM G+N+SN+TT ++ G++M  T +T
Sbjct: 88  SMSGMNMSNSTT-SMSGMNMTNTTTT 112


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 427 IEKDFKKMIRYCSVVRVIAHTQMXXXXXXXXXXTLWKS 540
           ++K+F+KM   C+++RV A T+            +W+S
Sbjct: 623 LKKEFEKMPLGCNILRVDAQTKDGALMDMLILQPIWRS 660


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -1

Query: 423  FASKLILPFLTGFSESLLLAFVPVFVEATST 331
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 279 RGLNVSNNTTQTIGGVSMMV 220
           R LNVSNNTT  +  V+ ++
Sbjct: 252 RSLNVSNNTTPPLSTVNKII 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,204,593
Number of Sequences: 5004
Number of extensions: 42093
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)