Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30772
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   139   1e-33
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   137   5e-33
06_03_0884 + 25651238-25652164,25653851-25654504                       29   2.4  
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    29   2.4  
06_03_0883 + 25644786-25645394                                         27   7.2  
05_05_0290 - 23879064-23880035                                         27   9.6  
05_03_0651 + 16605662-16605722,16605920-16606185                       27   9.6  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  139 bits (336), Expect = 1e-33
 Identities = 63/87 (72%), Positives = 75/87 (86%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP  HLT+F+GYKAGMTH+VRE ++P
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPC-HLTSFVGYKAGMTHIVREVEKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCVVLL 262
           GSK++KKE  EAVTIIETPP+V V L+
Sbjct: 64  GSKLHKKETCEAVTIIETPPLVIVGLV 90



 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 37/80 (46%), Positives = 53/80 (66%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           +V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K I+ 
Sbjct: 89  LVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQM 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
             +KM +Y S+VRVIAHTQ+
Sbjct: 149 QLEKMKKYASIVRVIAHTQI 168


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  137 bits (332), Expect = 5e-33
 Identities = 62/87 (71%), Positives = 75/87 (86%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP  HLT+F+GYKAGMTH+VRE ++P
Sbjct: 5   KFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPC-HLTSFVGYKAGMTHIVREVEKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCVVLL 262
           GSK++KKE  EAVTIIETPP+V V L+
Sbjct: 64  GSKLHKKETCEAVTIIETPPIVVVGLV 90



 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 37/80 (46%), Positives = 52/80 (65%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           +V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K I+ 
Sbjct: 89  LVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQM 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
             +KM +Y SVVRVI HTQ+
Sbjct: 149 QLEKMKKYASVVRVIVHTQI 168


>06_03_0884 + 25651238-25652164,25653851-25654504
          Length = 526

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 250 CRVVGYIETPHGLRALLTVWAEHMSEDC 333
           C+V+GY + P G + L+ VWA    E C
Sbjct: 393 CQVLGY-DVPRGTQVLVNVWAIGRDERC 419


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +3

Query: 426 NRKRFQEDDPLL*CCKSHCPHSNEAVKTR 512
           N +RF  +DPLL CC  H P+   A   R
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDR 325


>06_03_0883 + 25644786-25645394
          Length = 202

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 250 CRVVGYIETPHGLRALLTVWAEHMSEDC 333
           C+V+GY + P G + L+  WA    E C
Sbjct: 67  CQVLGY-DVPRGTQVLVNAWAIGRDERC 93


>05_05_0290 - 23879064-23880035
          Length = 323

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 167 EPDRPGSKINKKEXVEAVTIIETPPMV-CVVLLDTL 271
           +P R G+   KKE VEA+  ++   +V C V LD L
Sbjct: 171 DPSRNGTPPAKKEAVEALPTVKIEEVVSCSVCLDDL 206


>05_03_0651 + 16605662-16605722,16605920-16606185
          Length = 108

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 226 HRDSSDGLCRVVGYIETPHGLRALLTVWAEHMSED 330
           H+ +SDG CR +  IE   G     T  A H+++D
Sbjct: 4   HKANSDGDCRTLEEIEIGQGTIPTNTTHAIHIADD 38


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,692,095
Number of Sequences: 37544
Number of extensions: 289391
Number of successful extensions: 644
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)