Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30772
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p pro...   155   5e-38
AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal pr...   155   5e-38
AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD...   155   5e-38
AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA...   155   5e-38
AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC...   135   4e-32
AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE...   135   4e-32
AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB...   135   4e-32

>BT011339-1|AAR96131.1|  465|Drosophila melanogaster RH62603p
           protein.
          Length = 465

 Score =  155 bits (375), Expect = 5e-38
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRP
Sbjct: 16  KFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRP 74

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSKINKKE VEAVT++ETPPM+ V
Sbjct: 75  GSKINKKEVVEAVTVLETPPMIVV 98



 Score =  120 bits (290), Expect = 1e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKD 438
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W D+LG+KSIE D
Sbjct: 101 VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIEND 160

Query: 439 FKKMIRYCSVVRVIAHTQM 495
           F+KM+RYC V+RVIAH+Q+
Sbjct: 161 FRKMLRYCKVIRVIAHSQI 179



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 414 WTQINRKRFQEDD--PLL*CCK--SHCPHSN-EAVKTRQKKAHIMEI 539
           WT    K+  E+D   +L  CK      HS    +K RQKKAH+MEI
Sbjct: 148 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEI 194


>AF016835-1|AAC26144.1|  416|Drosophila melanogaster ribosomal
           protein L3 protein.
          Length = 416

 Score =  155 bits (375), Expect = 5e-38
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRP
Sbjct: 5   KFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSKINKKE VEAVT++ETPPM+ V
Sbjct: 64  GSKINKKEVVEAVTVLETPPMIVV 87



 Score =  120 bits (290), Expect = 1e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKD 438
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W D+LG+KSIE D
Sbjct: 90  VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIEND 149

Query: 439 FKKMIRYCSVVRVIAHTQM 495
           F+KM+RYC V+RVIAH+Q+
Sbjct: 150 FRKMLRYCKVIRVIAHSQI 168



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 414 WTQINRKRFQEDD--PLL*CCK--SHCPHSN-EAVKTRQKKAHIMEI 539
           WT    K+  E+D   +L  CK      HS    +K RQKKAH+MEI
Sbjct: 137 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEI 183


>AE014297-1263|AAF54612.2|  161|Drosophila melanogaster CG4863-PD,
           isoform D protein.
          Length = 161

 Score =  155 bits (375), Expect = 5e-38
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRP
Sbjct: 5   KFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSKINKKE VEAVT++ETPPM+ V
Sbjct: 64  GSKINKKEVVEAVTVLETPPMIVV 87



 Score = 72.1 bits (169), Expect = 4e-13
 Identities = 28/34 (82%), Positives = 32/34 (94%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 360
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY
Sbjct: 90  VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWY 123


>AE014297-1262|AAF54610.2|  416|Drosophila melanogaster CG4863-PA,
           isoform A protein.
          Length = 416

 Score =  155 bits (375), Expect = 5e-38
 Identities = 71/84 (84%), Positives = 75/84 (89%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHGSM FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRP
Sbjct: 5   KFSAPRHGSMAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRP 63

Query: 182 GSKINKKEXVEAVTIIETPPMVCV 253
           GSKINKKE VEAVT++ETPPM+ V
Sbjct: 64  GSKINKKEVVEAVTVLETPPMIVV 87



 Score =  120 bits (290), Expect = 1e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKD 438
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W D+LG+KSIE D
Sbjct: 90  VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIEND 149

Query: 439 FKKMIRYCSVVRVIAHTQM 495
           F+KM+RYC V+RVIAH+Q+
Sbjct: 150 FRKMLRYCKVIRVIAHSQI 168



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 414 WTQINRKRFQEDD--PLL*CCK--SHCPHSN-EAVKTRQKKAHIMEI 539
           WT    K+  E+D   +L  CK      HS    +K RQKKAH+MEI
Sbjct: 137 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEI 183


>AE014297-1266|AAF54611.1|  125|Drosophila melanogaster CG4863-PC,
           isoform C protein.
          Length = 125

 Score =  135 bits (326), Expect = 4e-32
 Identities = 62/75 (82%), Positives = 66/75 (88%)
 Frame = +2

Query: 29  MGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRPGSKINKKEX 208
           M FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRPGSKINKKE 
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRPGSKINKKEV 59

Query: 209 VEAVTIIETPPMVCV 253
           VEAVT++ETPPM+ V
Sbjct: 60  VEAVTVLETPPMIVV 74



 Score = 64.9 bits (151), Expect = 7e-11
 Identities = 26/32 (81%), Positives = 30/32 (93%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 354
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKN
Sbjct: 77  VGYIETPFGLRALVNVWAQHLSEECRRRFYKN 108


>AE014297-1265|AAF54609.1|  403|Drosophila melanogaster CG4863-PE,
           isoform E protein.
          Length = 403

 Score =  135 bits (326), Expect = 4e-32
 Identities = 62/75 (82%), Positives = 66/75 (88%)
 Frame = +2

Query: 29  MGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRPGSKINKKEX 208
           M FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRPGSKINKKE 
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRPGSKINKKEV 59

Query: 209 VEAVTIIETPPMVCV 253
           VEAVT++ETPPM+ V
Sbjct: 60  VEAVTVLETPPMIVV 74



 Score =  120 bits (290), Expect = 1e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKD 438
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W D+LG+KSIE D
Sbjct: 77  VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIEND 136

Query: 439 FKKMIRYCSVVRVIAHTQM 495
           F+KM+RYC V+RVIAH+Q+
Sbjct: 137 FRKMLRYCKVIRVIAHSQI 155



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 414 WTQINRKRFQEDD--PLL*CCK--SHCPHSN-EAVKTRQKKAHIMEI 539
           WT    K+  E+D   +L  CK      HS    +K RQKKAH+MEI
Sbjct: 124 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEI 170


>AE014297-1264|AAN13496.1|  403|Drosophila melanogaster CG4863-PB,
           isoform B protein.
          Length = 403

 Score =  135 bits (326), Expect = 4e-32
 Identities = 62/75 (82%), Positives = 66/75 (88%)
 Frame = +2

Query: 29  MGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRPGSKINKKEX 208
           M FYPKKRS RHRGKVKAFPKDD SKP  HLT FIGYKAGMTH+VRE DRPGSKINKKE 
Sbjct: 1   MAFYPKKRSARHRGKVKAFPKDDASKPV-HLTCFIGYKAGMTHIVREADRPGSKINKKEV 59

Query: 209 VEAVTIIETPPMVCV 253
           VEAVT++ETPPM+ V
Sbjct: 60  VEAVTVLETPPMIVV 74



 Score =  120 bits (290), Expect = 1e-27
 Identities = 50/79 (63%), Positives = 61/79 (77%)
 Frame = +1

Query: 259 VGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEKD 438
           VGYIETP GLRAL+ VWA+H+SE+CRRRFYKNWY             W D+LG+KSIE D
Sbjct: 77  VGYIETPFGLRALVNVWAQHLSEECRRRFYKNWYKSKKKAFTKASKKWTDDLGKKSIEND 136

Query: 439 FKKMIRYCSVVRVIAHTQM 495
           F+KM+RYC V+RVIAH+Q+
Sbjct: 137 FRKMLRYCKVIRVIAHSQI 155



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
 Frame = +3

Query: 414 WTQINRKRFQEDD--PLL*CCK--SHCPHSN-EAVKTRQKKAHIMEI 539
           WT    K+  E+D   +L  CK      HS    +K RQKKAH+MEI
Sbjct: 124 WTDDLGKKSIENDFRKMLRYCKVIRVIAHSQIRLIKQRQKKAHVMEI 170


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,167,997
Number of Sequences: 53049
Number of extensions: 479985
Number of successful extensions: 991
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)