Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30772
         (540 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal prote...   145   2e-35
Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal prote...   145   2e-35
Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical p...   145   2e-35
Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical p...   145   2e-35
Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical pr...   145   2e-35
Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical pr...   145   2e-35
Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical p...    55   4e-08
Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical pr...    55   4e-08
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    34   0.075
AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical ...    30   0.93 
Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical pr...    27   8.6  
Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical pr...    27   8.6  

>Z69337-1|CAA93269.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z69336-1|CAA93268.1|  401|Caenorhabditis elegans ribosomal protein
           L3 protein.
          Length = 401

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z66495-14|CAH04729.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z66495-12|CAA91277.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z49936-7|CAH10799.1|  353|Caenorhabditis elegans Hypothetical
           protein F13B10.2c protein.
          Length = 353

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z49936-6|CAA90183.1|  401|Caenorhabditis elegans Hypothetical
           protein F13B10.2a protein.
          Length = 401

 Score =  145 bits (351), Expect = 2e-35
 Identities = 65/82 (79%), Positives = 74/82 (90%)
 Frame = +2

Query: 2   KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPXXHLTAFIGYKAGMTHVVREPDRP 181
           KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP  HLTAF+GYKAGMTH+VR+ D+P
Sbjct: 5   KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPI-HLTAFLGYKAGMTHIVRDVDKP 63

Query: 182 GSKINKKEXVEAVTIIETPPMV 247
           GSK+NKKE VEAVTI+ETPPMV
Sbjct: 64  GSKVNKKEVVEAVTIVETPPMV 85



 Score =  103 bits (248), Expect = 6e-23
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = +1

Query: 256 VVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIEK 435
           V GY++TP G RAL T+WAEH+SE+ RRRFY NW              WQDE G+K IE 
Sbjct: 89  VTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKLIEA 148

Query: 436 DFKKMIRYCSVVRVIAHTQM 495
           DF K+ +YCS +RVIAHTQM
Sbjct: 149 DFAKLKKYCSSIRVIAHTQM 168


>Z66495-15|CAH04728.1|  303|Caenorhabditis elegans Hypothetical
          protein F13B10.2d protein.
          Length = 303

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 2  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 91
          KFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 5  KFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 400 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 495
           WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 70


>Z49936-8|CAH10798.1|  303|Caenorhabditis elegans Hypothetical
          protein F13B10.2d protein.
          Length = 303

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 23/30 (76%), Positives = 26/30 (86%)
 Frame = +2

Query: 2  KFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 91
          KFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 5  KFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 400 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 495
           WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 39  WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 70


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
            F54F3.1 protein.
          Length = 1584

 Score = 33.9 bits (74), Expect = 0.075
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -3

Query: 370  SCICTSFCRSDVDSLQTYAPPRQS--KERVVHEGSQCIQQHDTN 245
            +C C    + D  S   YAP      + R+ H  +QC+  HDTN
Sbjct: 1134 ACKCVDGFKGDGTSCVPYAPATNCNLEPRICHANAQCVMHHDTN 1177


>AF003146-5|AAB54199.1|  299|Caenorhabditis elegans Hypothetical
           protein F56F4.2 protein.
          Length = 299

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 241 DGLCRVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 360
           +G   + GY++   G+R    VW E  S+   +   KNW+
Sbjct: 204 NGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243


>Z68748-4|CAD27622.1|  617|Caenorhabditis elegans Hypothetical
           protein F13H10.3b protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 357 PVFVEATSTVFRHMLR--PDSQKSA 289
           P F E T +VFRH  R  PD + SA
Sbjct: 3   PFFAEFTESVFRHFRRNEPDEENSA 27


>Z68748-3|CAA92953.2|  615|Caenorhabditis elegans Hypothetical
           protein F13H10.3a protein.
          Length = 615

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -1

Query: 357 PVFVEATSTVFRHMLR--PDSQKSA 289
           P F E T +VFRH  R  PD + SA
Sbjct: 3   PFFAEFTESVFRHFRRNEPDEENSA 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,285,549
Number of Sequences: 27780
Number of extensions: 243479
Number of successful extensions: 574
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)