Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30771
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    32   0.028
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    29   0.19 
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    26   1.8  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   2.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   2.4  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   3.2  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    24   5.5  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    24   5.5  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    24   7.3  
SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|ch...    23   9.6  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    23   9.6  
SPAC343.14c |||translation initiation factor eIF2B|Schizosacchar...    23   9.6  

>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 31.9 bits (69), Expect = 0.028
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +2

Query: 11  NGEKVIIDYTDTGGSSR---QDDVQELPSSETANHTHSPVDS--DSIEXRIHIDDL-SEH 172
           +G+KV++D  +    S    QD++  L   E  +H+H+P      ++   I+  DL S H
Sbjct: 368 SGKKVVVDQKEASSESSDEDQDELDNLTKVEGQSHSHNPKAPVIRNLPRPIYHQDLHSSH 427

Query: 173 IVIDESL 193
           + + ES+
Sbjct: 428 VAVPESI 434


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 29.1 bits (62), Expect = 0.19
 Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 5   TSNGEKVIIDYTDTGGSSRQDDVQELP-SSETANHTHSPVDSDSIE 139
           T   E    DY     ++RQDDVQ++   +E+ N T    ++++++
Sbjct: 468 TEENEAAEADYPGVNRNTRQDDVQDISMETESQNETDESQNTENVD 513


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 14  GEKVIIDYTDTGGSSRQDDVQELPSSETAN 103
           G ++++D  D   S R  D  +LPSS   N
Sbjct: 208 GRRIVVDEPDRPDSIRSTDNADLPSSSQNN 237


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 71  VQELPSSETANHTHSPVDSDSIEXRIHIDDLSEHIVI 181
           V ELP  ET       + S  +     +DDL +H+ +
Sbjct: 152 VYELPDPETKKSKIKALQSQLVRVNGELDDLQKHLTL 188


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 62  QDDVQELPSSETANHTHSPVDSDSIEXRIHID 157
           +D+  +LPS+  +N  + P DS + + ++ I+
Sbjct: 199 EDEDLQLPSNSNSNVEYGPFDSTTFDRQLSIE 230


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 125 NPQGSECDLLFQRMEALAH 69
           NP G ECD L+  M  + H
Sbjct: 43  NPNGVECDNLYLDMNGIVH 61


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 252 PGAICKNLSSLHMXVXCCAVRLSSITIC 169
           P A CK LS LH  V   ++  +   IC
Sbjct: 206 PPAFCKTLSKLHSHVTPHSLAYTQSVIC 233


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -3

Query: 264  NFISPGAICKNLSSLHMXVXCCAVRLSSITICSLKSSMCIRXSME 130
            + I+P  +   L    +    C +RL + +ICSL SS   + S +
Sbjct: 978  SMITPAWLLFLLRQQDIHYFICGIRLLNQSICSLGSSFLSKFSQK 1022


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -3

Query: 243 ICKNLSSLHMXVXCCAVRLSS--ITICSLKSS 154
           + KNLS L + +  CAVR  +  I  C+  S+
Sbjct: 844 LVKNLSLLELALLICAVRFEARDIPACNFNSA 875


>SPAC144.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 249

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 110 ECDLLFQRMEALAHHL 63
           ECD  F R +ALA H+
Sbjct: 112 ECDRSFTRSDALAKHM 127


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 10/40 (25%), Positives = 22/40 (55%)
 Frame = +2

Query: 2   FTSNGEKVIIDYTDTGGSSRQDDVQELPSSETANHTHSPV 121
           + SN +   ++Y D   ++R+D ++ L  + T +  H+ V
Sbjct: 686 YESNYDDAFVEYKDATVANRKDFIEFLFHNITVSSKHTAV 725


>SPAC343.14c |||translation initiation factor
           eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +2

Query: 17  EKVIIDYTDTGGSSRQDDVQELPSSETANHTHSPV 121
           EK+I+  +++   S++ D+   PS+E    +H PV
Sbjct: 101 EKLIVSSSNSSSPSQKRDI---PSNEKLVQSHEPV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,491,442
Number of Sequences: 5004
Number of extensions: 27075
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)