Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30771
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0665 - 5413561-5413593,5413785-5413907,5414020-5414259,541...    27   2.8  
04_04_0748 + 27738155-27740290                                         27   5.0  
11_01_0667 + 5436764-5437384,5437684-5437923,5438037-5438159,543...    26   6.6  
10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314           26   8.7  

>11_01_0665 -
           5413561-5413593,5413785-5413907,5414020-5414259,
           5414564-5415184
          Length = 338

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 235 KFILTPHXSLXLRSQTFINHNMFT*IIDVYSXFYGVR 125
           +F   PH +  + + T+I  +MF   +D Y+  +G+R
Sbjct: 60  EFCELPHMAYPVGTPTYIPRDMFVEYLDSYTDQFGIR 96


>04_04_0748 + 27738155-27740290
          Length = 711

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 79  LLHIILSTRSSCIRVINYD 23
           LL  I ST +SCIRVI++D
Sbjct: 448 LLDEIASTTASCIRVIDFD 466


>11_01_0667 +
           5436764-5437384,5437684-5437923,5438037-5438159,
           5438301-5438480
          Length = 387

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 235 KFILTPHXSLXLRSQTFINHNMFT*IIDVYSXFYGVR 125
           +F   PH +    + T++  +MF   +D Y+  +G+R
Sbjct: 60  EFCELPHMAYPAGTPTYVPRDMFVEYLDSYANQFGIR 96


>10_05_0113 + 9280756-9283489,9283726-9284048,9284201-9284314
          Length = 1056

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -2

Query: 319  KWLEMIIPLHMCQITNSLELYFTWSNL*KFILTPHXS 209
            K L  I    MC + N+  LY TW    K  L+ H S
Sbjct: 1012 KELSGIKESEMCGMINTASLYITWQQERKDALSMHAS 1048


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,411,964
Number of Sequences: 37544
Number of extensions: 165734
Number of successful extensions: 387
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)