Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30769
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy... 87 2e-18
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac... 87 2e-18
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo... 30 0.21
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch... 29 0.48
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 27 2.6
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar... 27 2.6
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 6.0
SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr... 25 6.0
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 7.9
SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein ... 25 7.9
>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/49 (77%), Positives = 46/49 (93%)
Frame = +2
Query: 119 MGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
+GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIK +K
Sbjct: 32 LGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 46.0 bits (104), Expect = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKKVTAFVP DGCLN ++ENDE
Sbjct: 77 NGKKVTAFVPHDGCLNFVDENDE 99
Score = 31.9 bits (69), Expect = 0.069
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 66 NHRREQRWADKEFKK 110
NHRRE+RWAD +KK
Sbjct: 15 NHRREERWADAHYKK 29
>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
S23|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 86.6 bits (205), Expect = 2e-18
Identities = 38/49 (77%), Positives = 46/49 (93%)
Frame = +2
Query: 119 MGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
+GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIK +K
Sbjct: 32 LGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 67.7 bits (158), Expect = 1e-12
Identities = 31/42 (73%), Positives = 36/42 (85%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
++GFGRKG A GDIPGVRFKVVKVA V L AL+ EKKE+PR+
Sbjct: 102 LSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143
Score = 46.0 bits (104), Expect = 4e-06
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKKVTAFVP DGCLN ++ENDE
Sbjct: 77 NGKKVTAFVPHDGCLNFVDENDE 99
Score = 31.9 bits (69), Expect = 0.069
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 66 NHRREQRWADKEFKK 110
NHRRE+RWAD +KK
Sbjct: 15 NHRREERWADAHYKK 29
>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
S12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 152 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
G+ +G+ V+ K+PNSA+RK RV+L
Sbjct: 47 GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL 78
>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 815
Score = 29.1 bits (62), Expect = 0.48
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 539 IYYVLGILHFRTYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTNSGN 366
+ YV GI+ + TY + ++ Y + ++ LFL + VGY++HL N N
Sbjct: 234 VSYVSGIVFYTTYADFPKKIRLLYSGNYQGNFFPLFLSILC----VGYYHHLLNNPSN 287
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = -1
Query: 545 HNIYYVLGILHFRTYKQRASRQQVTYHNVHL*SWSLLFLFVESEERHVGYFYHLKTN--S 372
HN Y++ F T K++ R +++HN W+ L F+ + YFY ++ S
Sbjct: 179 HNNPYIIRGYRFYTSKRKCFRSILSWHNETFNIWTHLSAFIVF-FAVLAYFYPSSSSWVS 237
Query: 371 GNVTDGV 351
NV++ +
Sbjct: 238 SNVSNRI 244
>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 682
Score = 26.6 bits (56), Expect = 2.6
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Frame = -2
Query: 148 ERVSLPFRTHVEA-----FLNSLSAHRCSRRWF---TCYAPFVFLGV 32
+R SL +R H+E F+ SL C R +F T Y P +FLGV
Sbjct: 341 QRKSLNWRQHLEIVGAVFFIFSLFFFLCMRNFFPGFTIYFPALFLGV 387
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.4 bits (53), Expect = 6.0
Identities = 38/166 (22%), Positives = 61/166 (36%), Gaps = 6/166 (3%)
Frame = -2
Query: 517 YILELINNALPDSRSLITMYTYDLGRSFFSL*RARRDTLATFTTLKRTPGMSPTA*PLRP 338
++ E+ N L D + + Y +G F SL + ++ PLR
Sbjct: 739 FLCEVFANYL-DWKYARIIQQYQIGHRFASLITKLLNVTFGIEYFNPKTTVNKKTLPLRE 797
Query: 337 NPATSIRRFLRCGLGNRHGGRMRSLSFRLNELYTDAFAD-----GRVGLLSFYTNFLEDD 173
++RFL NR+ + S+ +N LYTD F+ + + ++F
Sbjct: 798 LSHYIVQRFLVQQDSNRYLHPLLSVMDLINLLYTDIFSTISSPRAKAAKMWLISSFCAMK 857
Query: 172 ALCVRCTTERVSL-PFRTHVEAFLNSLSAHRCSRRWFTCYAPFVFL 38
L C ++L P E F S C R C AP + L
Sbjct: 858 TLI--CLRGFLNLKPSELERELFSRSPDLFNCLPRLLCCIAPILQL 901
>SPCC550.08 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 449 SWSLLFLFVESEERHVGYFYHLKTNSGNVTD--GVTFTTESRH 327
SW L+++ V S+E+ GY L N+ D G+ ES H
Sbjct: 129 SWYLVYVGVSSKEQGKGYLRKLIEPIFNICDQEGLPIYLESSH 171
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 386 LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 282
+K + VTD T+S H Y + M FR+ R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704
>SPAC3C7.14c |obr1|apt1, uhp1|ubiquitinated histone-like protein
Uhp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 202
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +2
Query: 107 ESLHMGTKWKANPFGGASHAKGI 175
ES+H G+ W A + GA ++ +
Sbjct: 158 ESIHGGSSWGAGSYAGADGSRNV 180
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,403,112
Number of Sequences: 5004
Number of extensions: 49718
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -