Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30769
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 83 1e-16
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 83 1e-16
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 79 2e-15
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 44 1e-04
03_04_0240 + 19232391-19233098 33 0.16
02_02_0223 - 8021040-8021247,8022275-8022367,8022808-8023059,802... 29 2.0
02_02_0466 + 10616903-10616997,10617796-10618012 27 8.0
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K +K
Sbjct: 31 HLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 79
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+ AFVP DGCLN IEENDE
Sbjct: 76 NGKKIAAFVPNDGCLNFIEENDE 98
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 69 HRREQRWADKEFKKA 113
HRR QRWADK +KK+
Sbjct: 16 HRRNQRWADKAYKKS 30
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K +K
Sbjct: 31 HLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 79
Score = 83.4 bits (197), Expect = 1e-16
Identities = 36/50 (72%), Positives = 43/50 (86%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+K +K
Sbjct: 201 HLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLVKNGKK 249
Score = 82.2 bits (194), Expect = 3e-16
Identities = 37/42 (88%), Positives = 41/42 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 271 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 312
Score = 78.6 bits (185), Expect = 3e-15
Identities = 35/40 (87%), Positives = 39/40 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERP 446
+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+P
Sbjct: 101 IAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 140
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+ AFVP DGCLN IEENDE
Sbjct: 76 NGKKIAAFVPNDGCLNFIEENDE 98
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+ AFVP DGCLN IEENDE
Sbjct: 246 NGKKIAAFVPNDGCLNFIEENDE 268
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 69 HRREQRWADKEFKKA 113
HRR QRWADK +KK+
Sbjct: 16 HRRNQRWADKAYKKS 30
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 69 HRREQRWADKEFKKA 113
HRR QRWADK +KK+
Sbjct: 186 HRRNQRWADKAYKKS 200
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/50 (70%), Positives = 41/50 (82%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+K +K
Sbjct: 102 HFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLVKNGKK 150
Score = 39.9 bits (89), Expect = 0.001
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEEND 318
+GKK+ AFVP DGCLN I+EN+
Sbjct: 147 NGKKIAAFVPNDGCLNFIKENE 168
Score = 31.1 bits (67), Expect = 0.65
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 69 HRREQRWADKEFKKA 113
HRR QRWADK +KK+
Sbjct: 87 HRRNQRWADKAYKKS 101
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVK 395
++GFG KGHAVGDI GVRF+VVK
Sbjct: 71 ISGFGHKGHAVGDIRGVRFEVVK 93
>03_04_0240 + 19232391-19233098
Length = 235
Score = 33.1 bits (72), Expect = 0.16
Identities = 25/64 (39%), Positives = 29/64 (45%)
Frame = -2
Query: 403 LATFTTLKRTPGMSPTA*PLRPNPATSIRRFLRCGLGNRHGGRMRSLSFRLNELYTDAFA 224
LA F + RT G++PTA A N H GR SFRL ELY A A
Sbjct: 108 LAIFAWMCRTCGLAPTAELF----AVLFTACTTTKDVNTHAGRAEEDSFRLRELYASAGA 163
Query: 223 DGRV 212
GR+
Sbjct: 164 FGRL 167
>02_02_0223 -
8021040-8021247,8022275-8022367,8022808-8023059,
8023143-8023597,8023667-8023983,8024019-8024298,
8024423-8024728,8024762-8025130,8025216-8025455
Length = 839
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 142 VSLPFRTHVEAFLNSLSAHRCSRRWFT 62
+++P RT+ E F+ + RCSR+WFT
Sbjct: 372 IAIPGRTYNEEFIPD-AMPRCSRKWFT 397
>02_02_0466 + 10616903-10616997,10617796-10618012
Length = 103
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 51 GA*HVNHRREQRWADKEFKKASTWVRNG 134
G H EQRW ++ ++ TW+R G
Sbjct: 60 GPDHTVEEGEQRWRPQQRRRLMTWIRAG 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,718,636
Number of Sequences: 37544
Number of extensions: 374348
Number of successful extensions: 815
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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