Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30769
(572 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 94 3e-19
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 94 3e-19
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 94 3e-19
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 85 2e-16
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 35 0.18
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 35 0.18
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.18
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.18
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 35 0.18
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 35 0.18
AK098732-1|BAC05396.1| 166|Homo sapiens protein ( Homo sapiens ... 30 5.0
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 94.3 bits (224), Expect = 3e-19
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK +K
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 86.2 bits (204), Expect = 7e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 47.2 bits (107), Expect = 4e-05
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+TAFVP DGCLN IEENDE
Sbjct: 77 NGKKITAFVPNDGCLNFIEENDE 99
Score = 31.1 bits (67), Expect = 2.9
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +3
Query: 66 NHRREQRWADKEFKKA 113
+HRR+Q+W DK++KKA
Sbjct: 15 SHRRDQKWHDKQYKKA 30
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 94.3 bits (224), Expect = 3e-19
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK +K
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 86.2 bits (204), Expect = 7e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 47.2 bits (107), Expect = 4e-05
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+TAFVP DGCLN IEENDE
Sbjct: 77 NGKKITAFVPNDGCLNFIEENDE 99
Score = 31.1 bits (67), Expect = 2.9
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +3
Query: 66 NHRREQRWADKEFKKA 113
+HRR+Q+W DK++KKA
Sbjct: 15 SHRRDQKWHDKQYKKA 30
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 94.3 bits (224), Expect = 3e-19
Identities = 44/50 (88%), Positives = 46/50 (92%)
Frame = +2
Query: 116 HMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKTERK 265
H+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK +K
Sbjct: 31 HLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKK 80
Score = 86.2 bits (204), Expect = 7e-17
Identities = 41/42 (97%), Positives = 41/42 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 452
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPRS
Sbjct: 102 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
Score = 47.2 bits (107), Expect = 4e-05
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +1
Query: 253 DGKKVTAFVPRDGCLNHIEENDE 321
+GKK+TAFVP DGCLN IEENDE
Sbjct: 77 NGKKITAFVPNDGCLNFIEENDE 99
Score = 31.1 bits (67), Expect = 2.9
Identities = 10/16 (62%), Positives = 15/16 (93%)
Frame = +3
Query: 66 NHRREQRWADKEFKKA 113
+HRR+Q+W DK++KKA
Sbjct: 15 SHRRDQKWHDKQYKKA 30
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 84.6 bits (200), Expect = 2e-16
Identities = 40/41 (97%), Positives = 40/41 (97%)
Frame = +3
Query: 327 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPR 449
VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK KKERPR
Sbjct: 19 VAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPR 59
Score = 35.5 bits (78), Expect = 0.13
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +1
Query: 274 FVPRDGCLNHIEENDE 321
FVP DGCLN IEENDE
Sbjct: 1 FVPNDGCLNFIEENDE 16
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +2
Query: 134 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 247
K P G KG+VL + K+PNSA RKC RV+L
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL 85
>AK098732-1|BAC05396.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ25866 fis, clone CBR01987. ).
Length = 166
Score = 30.3 bits (65), Expect = 5.0
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -2
Query: 343 RPNPATSIRRFLRC--GLGNRHGGRMRSLSFR 254
RP+P T +R+ RC G G R G R RS S R
Sbjct: 88 RPHPGTGLRQTPRCTKGQGPRRGRRRRSASAR 119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,782,350
Number of Sequences: 237096
Number of extensions: 1974932
Number of successful extensions: 5374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5374
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -