Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30769
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    26   0.23 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   0.93 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.93 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   2.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   6.6  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.7  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = -2

Query: 238 TDAFADGRVGLLSFYTN-FLEDDALCVRCTTERVSLPFRTHVEAFLNSLSAHRCSRRWFT 62
           TD   +  +G+  F  +  LED+ +  +C      L F T     ++   A RC+   F 
Sbjct: 90  TDKLNNPFIGMGEFLIDPSLEDEFMGPKCAAFLFQLSFATTSTTIVSGAMAERCN---FK 146

Query: 61  CYAPFVFL 38
            Y  F FL
Sbjct: 147 AYCLFSFL 154


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 348 GHAVGDIPGVRFKVVKVANVSLL 416
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 388  TLKRTPGMSPTA*PLRPNPATSIRR 314
            T  + PG+ P A  L PN  T + R
Sbjct: 1494 TQGQAPGIPPAATFLSPNSTTLVLR 1518


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 348 GHAVGDIPGVRFKVVKVANVSLL 416
           GH V D+PGVR +V++   + LL
Sbjct: 69  GHPVNDVPGVR-RVLRNGTLVLL 90



 Score = 21.0 bits (42), Expect = 8.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 388  TLKRTPGMSPTA*PLRPNPATSIRR 314
            T  + PG+ P A  L PN  T + R
Sbjct: 1490 TQGQAPGIPPAATFLSPNSTTLVLR 1514


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 348 GHAVGDIPGVR 380
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 468 SQCTPMILVAPFSLCRERGETRWL 397
           + C   ++V PFS   E  E RWL
Sbjct: 90  ADCLVGLVVMPFSAIYEVLENRWL 113


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 209 PNSAIRKCV 235
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 158 SHAKGIVLEKVGVEAKQPNSAIR 226
           +H K +VLE+   ++K P S  R
Sbjct: 73  THEKKLVLERSKTKSKSPESRDR 95


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -3

Query: 90  PIAVHDGGSRVTRRSYSSGFTHLDS 16
           P     GG  +T R     + H+DS
Sbjct: 145 PQMYSSGGEEITPRQSHQSYHHMDS 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,067
Number of Sequences: 438
Number of extensions: 3743
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)