Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30768
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    90   1e-19
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    90   1e-19
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   1.1  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   1.5  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   3.4  
SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.9  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    25   5.9  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   5.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   7.8  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   7.8  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 59/130 (45%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
 Frame = +3

Query: 3   ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPSA-YPLRSFTW-WKY*VPCAAS 176
           I+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP   + +R      K+      S
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDS 62

Query: 177 GHR*LLLGIGMFNSQNPYH*CCV*CINNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 356
           G+     G    + +           NNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 63  GN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 357 LGRKXGAKLT 386
           +G K G K T
Sbjct: 121 MGSK-GKKAT 129



 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +1

Query: 115 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNAS 255
           P+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ S
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPS 86


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 90.2 bits (214), Expect = 1e-19
 Identities = 59/130 (45%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
 Frame = +3

Query: 3   ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPSA-YPLRSFTW-WKY*VPCAAS 176
           I+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP   + +R      K+      S
Sbjct: 3   ITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLDS 62

Query: 177 GHR*LLLGIGMFNSQNPYH*CCV*CINNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 356
           G+     G    + +           NNELVRT TL K+AIV +DA PFR WYE+HY + 
Sbjct: 63  GN--FSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGIL 120

Query: 357 LGRKXGAKLT 386
           +G K G K T
Sbjct: 121 MGSK-GKKAT 129



 Score = 74.5 bits (175), Expect = 7e-15
 Identities = 33/47 (70%), Positives = 39/47 (82%)
 Frame = +1

Query: 115 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNAS 255
           P+RIH VR RGGN K+RALRLD+GNFSWGSE  ++KTRII V Y+ S
Sbjct: 40  PKRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPS 86


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 266 QFIVDALYTTSMIRVLRVEHSDPQEKLPVSRR 171
           QF ++ + T S  +V R  H DP  KLP  RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -3

Query: 181 CPDAAHGT*YFHHVNERSGYAEGP--SLVFAAGRPNSYFLFLRMGARFPPV 35
           CPD + G  Y        GY   P  S+++A    ++  LF+R+  ++PP+
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYPPL 357


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 334 YHCLNGVASTTTIAFLTRVFVRTNS 260
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 178 DTGNFSWGSECSTRKTRIIDVVYNASTMNWCVQRP 282
           + GN +W S+C +  T+    V N   +  C Q P
Sbjct: 99  EQGNSNWDSQCRSVATKYGFDVENTGCLGNCFQGP 133


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 154  TKYRALRLDTGNFSWGSECSTRKTRI 231
            T YRA+ LDTG+     E +  K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 12  DHWHKRRATGGKRAPIRKKRKYE 80
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 278 DPCQECNCCSRCNSIQAVV 334
           D C++   CS+C+++Q VV
Sbjct: 145 DHCKKMRRCSKCDAMQGVV 163


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 322 NGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIP 203
           NG + T  +     + V   SL + +   Q +G  ++NIP
Sbjct: 496 NGTSETNVLNLNDSLLVDPVSLYVEWAMQQDWGLIDINIP 535


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,863,199
Number of Sequences: 5004
Number of extensions: 37061
Number of successful extensions: 119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)