Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30768
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 92 2e-19
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 92 2e-19
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 31 0.37
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 31 0.49
08_01_0150 - 1179147-1179899,1180025-1180579 29 2.6
04_03_0549 - 17043135-17043351,17043641-17043846 29 2.6
01_06_0482 - 29672720-29673854,29673941-29676267 28 3.4
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 27 7.9
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497... 27 7.9
03_06_0019 - 31078669-31080081 27 7.9
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 91.9 bits (218), Expect = 2e-19
Identities = 59/128 (46%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Frame = +3
Query: 3 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPSAYPLRSFTWW---KY*VPCAA 173
ISRD HKRRATGGK+ RKKRKYELGR ANT+L + R K+
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRLD 62
Query: 174 SGHR*LLLGIGMFNSQNPYH*CCV*CINNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 353
+G+ G + NNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 63 TGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 354 PLGRKXGA 377
+GRK A
Sbjct: 121 DIGRKKKA 128
Score = 79.0 bits (186), Expect = 2e-15
Identities = 37/55 (67%), Positives = 42/55 (76%)
Frame = +1
Query: 91 PLQTPGSVPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNAS 255
P T S + + VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNAS
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS 87
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 91.9 bits (218), Expect = 2e-19
Identities = 59/128 (46%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Frame = +3
Query: 3 ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPSAYPLRSFTWW---KY*VPCAA 173
ISRD HKRRATGGK+ RKKRKYELGR ANT+L + R K+
Sbjct: 3 ISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLD 62
Query: 174 SGHR*LLLGIGMFNSQNPYH*CCV*CINNELVRTKTLVKNAIVVVDATPFRQWYESHYTL 353
+G+ G + NNELVRT+TLVK+AIV VDA PF+QWY +HY +
Sbjct: 63 TGN--YSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGV 120
Query: 354 PLGRKXGA 377
+GRK A
Sbjct: 121 DIGRKKKA 128
Score = 79.4 bits (187), Expect = 1e-15
Identities = 37/55 (67%), Positives = 42/55 (76%)
Frame = +1
Query: 91 PLQTPGSVPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNAS 255
P T S + + VR RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNAS
Sbjct: 33 PANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNAS 87
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 197
C Y L GV S IA L+ + R SL+ H+ YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 31.1 bits (67), Expect = 0.49
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 343 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 197
C Y L GV S IA L+ + R SL+ H+ YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
>08_01_0150 - 1179147-1179899,1180025-1180579
Length = 435
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 54 PIRKKRKYELGRPAANTRLGPSAYPLR 134
P R+ E P A+TRL P YPLR
Sbjct: 352 PQRRHTSLEAPPPTASTRLRPPTYPLR 378
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 347 IMRLIPLPEWSCIYYNNCILDKGLCTHQFIVDAL 246
++ L+ +P+WS +YY N +DK L I AL
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKLYNWSMIGAAL 105
>01_06_0482 - 29672720-29673854,29673941-29676267
Length = 1153
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 64 RRGSMS*GVPLQTPGSVPQRIHSVR 138
RRGSM+ V +QTP VP R VR
Sbjct: 271 RRGSMARQVSVQTPTPVPARSRDVR 295
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 24 KRRATGGKRAPIRKKRKYELGRPAA 98
KRR GG+RA R+K + E GR A
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKA 69
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 24 KRRATGGKRAPIRKKRKYELGRPAA 98
KRR GG+RA R+K + E GR A
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKA 105
>07_03_0493 +
18747427-18748356,18748594-18748697,18749586-18749795,
18749992-18750597,18750819-18751095,18751163-18751310,
18751957-18752044,18752167-18752284
Length = 826
Score = 27.1 bits (57), Expect = 7.9
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 226 GFCELNIPIPKRSY-RCPDAAHGT*YFHHVNERSGYAEGPSLVFAAGRP 83
GF + +P P+ RCPD H + HH + G A + A P
Sbjct: 30 GFFNILVPPPQSPRPRCPDHQHHHHHHHHHDAAGGAAAAAAAAAAEPTP 78
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 105 WCLQRDALTHTSSSCVWAH 49
WC QR L H S++C +H
Sbjct: 340 WCPQRRVLAHASTACFVSH 358
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,870,045
Number of Sequences: 37544
Number of extensions: 271932
Number of successful extensions: 758
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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