Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30768
         (480 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...   131   3e-31
AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical...    29   2.3  
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis...    28   4.0  
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis...    28   4.0  
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis...    28   4.0  
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis...    28   4.0  
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis...    28   4.0  
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res...    28   4.0  
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    27   9.3  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score =  131 bits (316), Expect = 3e-31
 Identities = 77/158 (48%), Positives = 89/158 (56%), Gaps = 2/158 (1%)
 Frame = +3

Query: 3   ISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPSAYPLRSFTWW--KY*VPCAAS 176
           ISRD WHKR  TG  +    KKRK+ELGRPAANT++G     L        KY      S
Sbjct: 3   ISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLDS 62

Query: 177 GHR*LLLGIGMFNSQNPYH*CCV*CINNELVRTKTLVKNAIVVVDATPFRQWYESHYTLP 356
           G+            +           NNELVRTKTLVK AI+ VDA PFRQWYE+HY LP
Sbjct: 63  GN--FSWASEQTTRKTRIVDTMYNATNNELVRTKTLVKGAIISVDAAPFRQWYEAHYALP 120

Query: 357 LGRKXGAKLTEAXEAIINKKRSXKTARXYLARQRLAKV 470
           L RK  AKL+E   AI+NKKRS  T + Y  RQ+ A V
Sbjct: 121 LARKKNAKLSEEDNAILNKKRSHHTMKKYTERQKTAAV 158



 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = +1

Query: 121 RIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNAS 255
           R+  VR+RGGN KYRALRLD+GNFSW SE +TRKTRI+D +YNA+
Sbjct: 42  RVRLVRTRGGNEKYRALRLDSGNFSWASEQTTRKTRIVDTMYNAT 86


>AL161712-13|CAC70137.1|  830|Caenorhabditis elegans Hypothetical
           protein Y66D12A.17 protein.
          Length = 830

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 263 FIVDALYTTSMIRVLRVEHSDPQEKL 186
           FI  A+Y  SM R LR+ H DP+  L
Sbjct: 743 FIEKAIYHVSMARCLRLMHKDPRVHL 768


>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
           resistance related protein1 protein.
          Length = 1540

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform e protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform c protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform b protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
           resistance protein familyprotein 1, isoform a protein.
          Length = 1528

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
           resistance-associatedprotein protein.
          Length = 1534

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 166 ALRLDTGNFSWGSECSTRKTRIIDVVYN 249
           A+++D G+F+WGS+   RK  + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638


>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
           protein K04H4.2c protein.
          Length = 1446

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 SLSVSTPFVHVVEILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMH 253
           S+  +TP +   EI+ST   VW  V      ++   K +S   C +H
Sbjct: 524 SVGETTPVIIKEEIISTATKVWKKVDKTSGVSINKNKCLSTQRCDLH 570


>Z81540-2|CAB04403.1|  190|Caenorhabditis elegans Hypothetical
           protein F46B3.2 protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 335 IPLPEW-SCIYYNNCILDKGLCTHQFIVDALYTTS 234
           I + +W +C ++ NC L  GLCT      A  T++
Sbjct: 107 ICVDQWDNCPFFKNCPLSCGLCTGNVTTPATTTST 141


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -2

Query: 362 PKRQRIMRLIPLPEWSCIYYNNCILDKGLCTHQFIVDALYTTSMIRVLRVE 210
           PK  +++ L+PL E  C  +   I  K L  ++ I    Y T   +  RV+
Sbjct: 44  PKSVKVIDLLPLYESDCDRHKKLIFCKNLMKNRQIFKYAYNTENGKFQRVQ 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,545,461
Number of Sequences: 27780
Number of extensions: 221641
Number of successful extensions: 686
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)