Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30761
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    57   8e-10
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    56   1e-09
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|...    27   0.73 
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   0.97 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    26   1.7  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   2.2  
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2...    25   3.0  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   3.9  
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch...    25   3.9  
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun...    24   5.2  
SPBC947.12 |kms2||spindle pole body protein Kms2|Schizosaccharom...    24   6.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   6.8  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    23   9.0  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.0  
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ...    23   9.0  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    23   9.0  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 56.8 bits (131), Expect = 8e-10
 Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +3

Query: 114 KDFLKRVKENERLLKEAKAAGKTVNLKRQPAPXKAAHIVS-GTEKPVLL 257
           +DFL RVK NE   KEAKA GKTV L+RQPAP   AH VS    +PV L
Sbjct: 103 QDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTL 151



 Score = 54.0 bits (124), Expect = 6e-09
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +1

Query: 1   NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQ 114
           NVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQ
Sbjct: 66  NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQ 103


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 56.4 bits (130), Expect = 1e-09
 Identities = 30/49 (61%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +3

Query: 114 KDFLKRVKENERLLKEAKAAGKTVNLKRQPAPXKAAHIVS-GTEKPVLL 257
           +DFL RVK NE   KEAKA GKTV L+RQPAP   AH VS    +PV L
Sbjct: 103 QDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTL 151



 Score = 54.0 bits (124), Expect = 6e-09
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +1

Query: 1   NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQ 114
           NVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQ
Sbjct: 66  NVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQ 103


>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 612

 Score = 27.1 bits (57), Expect = 0.73
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +3

Query: 108 QTKDFLKRVKENERLLK-EAKAAGKTVNLKRQPAPXKAAHIVSGTEKPVL 254
           Q K   K+ KE +  LK E+     T  +  QP P       SGTE  V+
Sbjct: 263 QKKSKAKKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 160 KPRLPARPS-T*RDSQLPLKLPTSSVELRNPSYCAYPIRIRSVKSNK 297
           KPRLP RPS T  +   P     +     +P +   P R++S+ +NK
Sbjct: 358 KPRLPPRPSHTLSELSSPALTSENLSSKPSPLFPPPPPRVKSLATNK 404


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 207 PXKAAHIVSGTEKPVLLRLSHTNS 278
           P +AAH   G   P L+ LSH +S
Sbjct: 235 PAEAAHAAGGGRGPELIALSHKSS 258


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 72 DALRYNPSANTLVDNHTES 16
          D  R N S N ++DNHT++
Sbjct: 29 DPARKNESTNDVIDNHTDT 47


>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
           Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 177

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 20/79 (25%), Positives = 33/79 (41%)
 Frame = +3

Query: 18  SRCDCQQACSRKDYTEAHQYPC*ACQALQVQTKDFLKRVKENERLLKEAKAAGKTVNLKR 197
           S C  Q+    +  T      C  C+A++ Q K  LK V   +  L  A    + +N   
Sbjct: 21  SSCQHQERALIEVRTRGRPLLCKKCRAIKQQLKSNLKCVCHLQPFLPFANEYQELLNF-T 79

Query: 198 QPAPXKAAHIVSGTEKPVL 254
           Q  P  A+  +  T+K ++
Sbjct: 80  QKNPILASLFLFSTDKDIM 98


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 203  WLSLQVDGLAGSLGF 159
            WL+++ DG++G +GF
Sbjct: 1085 WLAIRTDGISGLVGF 1099


>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 55  IIPKRINIRVEHVKHSKCRQKTSLR 129
           I+PK I IR++ ++  +   KTSLR
Sbjct: 3   ILPKSIPIRIQSLRRYQGSLKTSLR 27


>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
           Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 251

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 166 RLPARPST*RDSQLPL-KLPTSSVELRNPSYCAYPIRIRSVKSNKIFL 306
           RLP   S  + SQL +   PT  VEL+  +   Y IR  S  S ++FL
Sbjct: 79  RLPPGMSADQISQLKVGSKPT--VELKQENENTYQIREESTSSVRVFL 124


>SPBC947.12 |kms2||spindle pole body protein
          Kms2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 78 DIDALRYNPSANTLVDN 28
          D+DALR NP A  L+DN
Sbjct: 33 DVDALRLNPEA-PLLDN 48


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +3

Query: 105  VQTKDFLKRVKENERLLKEAKAAGKTVNLKRQPAPXKAAHIV---SGTEKPVLLRLS 266
            +Q K FL   K+N  + + + A    +  ++  +  K AH++   S +  P+ +R++
Sbjct: 3178 LQKKSFLLNEKKNSVMKEVSYAKPAVIEARKSVSDIKKAHLIELRSLSRPPMAIRIT 3234


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +1

Query: 163 PRLPARPST*RD---SQLPLKLPTSSVELRNP--SYCAYP 267
           P + A P++ R    S+LP++ P   + L NP   Y  YP
Sbjct: 541 PEIAAYPNSIRPELLSKLPVQTPNQKMPLMNPMHQYQPYP 580


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 220 PTSSVELRNPSYCAYPIRIRSVKSNKI 300
           P S +   +PS+  YP  ++S++ N+I
Sbjct: 326 PISDLHPYSPSWIPYPKELQSLQVNRI 352


>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 429

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -3

Query: 87  LNTDIDALRYNPSANTLVDNHTESMSSH 4
           +  D+  +  +PS  ++VD+ T ++ +H
Sbjct: 172 MKNDLKKVALSPSLKSMVDDETTALETH 199


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 149 PLILFDSLKEVFCLHL 102
           PL+L D  + V CLH+
Sbjct: 117 PLLLVDPFQRVICLHV 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,167,140
Number of Sequences: 5004
Number of extensions: 18719
Number of successful extensions: 82
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)