Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30761
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 65 1e-11
U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory ... 29 1.0
L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degeneri... 29 1.0
Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical pr... 27 3.2
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p... 27 4.2
AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical ... 27 4.2
AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical ... 27 4.2
AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical ... 27 4.2
Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical pr... 26 5.5
X53244-1|CAA37334.1| 75|Caenorhabditis elegans metallothionein... 26 5.5
U64853-6|AAB04979.1| 75|Caenorhabditis elegans Metallothionein... 26 5.5
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 26 5.5
M92909-1|AAA28110.1| 75|Caenorhabditis elegans metallothionein... 26 5.5
D17364-1|BAA04180.1| 75|Caenorhabditis elegans metallothionein... 26 5.5
AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical ... 26 5.5
AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical ... 26 5.5
AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical ... 26 5.5
AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical ... 26 5.5
Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical pr... 26 7.3
Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical pr... 26 7.3
AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein. 26 7.3
AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching abn... 26 7.3
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical pr... 25 9.7
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 25 9.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 25 9.7
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 65.3 bits (152), Expect = 1e-11
Identities = 28/37 (75%), Positives = 33/37 (89%)
Frame = +1
Query: 1 NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCR 111
NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR
Sbjct: 66 NVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCR 102
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Frame = +3
Query: 117 DFLKRVKENERLLKEAKAAGKTV-NLKRQPAPXKAAH-IVSGTEKPVLL 257
DFL RVK N+ K AK+AG+ V LKR P + AH + + +P LL
Sbjct: 104 DFLNRVKSNDEKRKAAKSAGQPVPALKRLPVAPRGAHTVTTQNNEPELL 152
>U67956-5|AAB07694.1| 724|Caenorhabditis elegans Mechanosensory
abnormality protein10 protein.
Length = 724
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 21 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTKDFLKRVKENERLLKEAKA 170
+C CQQ C++ YT ++ QAL + K +E KE A
Sbjct: 597 KCRCQQPCNQTIYTTSYSEAIWPSQALNISLGQCEKEAEECNEEYKENAA 646
>L25312-1|AAA17404.1| 724|Caenorhabditis elegans mec-10 degenerin
protein.
Length = 724
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +3
Query: 21 RCDCQQACSRKDYTEAHQYPC*ACQALQVQTKDFLKRVKENERLLKEAKA 170
+C CQQ C++ YT ++ QAL + K +E KE A
Sbjct: 597 KCRCQQPCNQTIYTTSYSEAIWPSQALNISLGQCEKEAEECNEEYKENAA 646
>Z71177-9|CAA94868.2| 425|Caenorhabditis elegans Hypothetical
protein AC3.4 protein.
Length = 425
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 95
+ C C+ R +C R YT+ QY C +CQ
Sbjct: 27 QSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>Z71177-2|CAA94867.1| 425|Caenorhabditis elegans Hypothetical
protein AC3.3 protein.
Length = 425
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 95
+ C C+ R +C R YT+ QY C +CQ
Sbjct: 27 QSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57
>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
protein F47C12.1 protein.
Length = 1827
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 18 SRCDCQQACSRKDYTEAHQYPC*AC 92
S +C+QAC Y+ + PC AC
Sbjct: 1610 SASECKQACKTGTYSNSGLEPCSAC 1634
>AL132853-5|CAB60443.1| 279|Caenorhabditis elegans Hypothetical
protein Y80D3A.9 protein.
Length = 279
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 251 DGFLSSTDDVGSFXGSWLSLQVDGLAGSL 165
DG LS D+ G+WL + G G L
Sbjct: 39 DGMLSGVDEKDVARGTWLGMDAHGKVGML 67
>AC026301-1|AAK68897.1| 280|Caenorhabditis elegans Hypothetical
protein Y54F10BM.6 protein.
Length = 280
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/64 (21%), Positives = 26/64 (40%)
Frame = +3
Query: 12 SCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTKDFLKRVKENERLLKEAKAAGKTVNL 191
+C C+ AC D+T+ + C C+ + K +++ ++N
Sbjct: 167 TCGHTSCE-ACVESDFTQKKRVVCLTCEGRSGGITENWKPHVPINYAIRDLLKDSFSINF 225
Query: 192 KRQP 203
KRQP
Sbjct: 226 KRQP 229
>AC017117-2|AAF16617.1| 295|Caenorhabditis elegans Hypothetical
protein F43C11.7 protein.
Length = 295
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 125 KEVFCLHLECLTCSTRILMRFGIILPRTRLLT 30
K + C H C CS++++ F I+ P R T
Sbjct: 23 KNLTCGHSICKACSSKLVSNFKILCPFCRKTT 54
>Z81526-4|CAB04267.2| 430|Caenorhabditis elegans Hypothetical
protein F33H2.7 protein.
Length = 430
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Frame = +3
Query: 30 CQQACSRKDYTEAHQYPC 83
C C RKD+ HQ+ C
Sbjct: 50 CTLKCQRKDWKSCHQFEC 67
>X53244-1|CAA37334.1| 75|Caenorhabditis elegans metallothionein-I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 6 DCSCSRCDCQQACSRKDYTEAHQ 74
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>U64853-6|AAB04979.1| 75|Caenorhabditis elegans Metallothionein
protein 1 protein.
Length = 75
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 6 DCSCSRCDCQQACSRKDYTEAHQ 74
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 186 NLKRQPAPXKAAHIVSGTE 242
NL+R+PAP K H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>M92909-1|AAA28110.1| 75|Caenorhabditis elegans metallothionein I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 6 DCSCSRCDCQQACSRKDYTEAHQ 74
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>D17364-1|BAA04180.1| 75|Caenorhabditis elegans metallothionein-I
protein.
Length = 75
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 6 DCSCSRCDCQQACSRKDYTEAHQ 74
DC C+ C C + D T HQ
Sbjct: 47 DCKCANCHCAEQKQCGDKTHQHQ 69
>AL117193-5|CAB54985.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.6 protein.
Length = 335
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 113
+ C C+ + +C R YT+ QY C VQT
Sbjct: 27 QSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-4|CAB54984.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.5 protein.
Length = 335
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 113
+ C C+ + +C R YT+ QY C VQT
Sbjct: 27 QSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-3|CAB54983.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.4 protein.
Length = 335
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 113
+ C C+ + +C R YT+ QY C VQT
Sbjct: 27 QSCGCAPKVQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>AL117193-2|CAB54982.1| 335|Caenorhabditis elegans Hypothetical
protein Y105C5A.3 protein.
Length = 335
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Frame = +3
Query: 3 RDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQALQVQT 113
+ C C+ + +C R YT+ QY C VQT
Sbjct: 27 QSCGCAPKIQPSCSCQRTTYTQPQQYSCSCQNTAPVQT 64
>Z81146-5|CAB03522.3| 699|Caenorhabditis elegans Hypothetical
protein K10D11.3 protein.
Length = 699
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 193 RDSQLPLKLPTSSVELRNPSYCAYP 267
+D+Q P K SS + NP Y YP
Sbjct: 29 QDTQFPTKNNNSSTDQYNPYYYPYP 53
>Z78016-1|CAB01439.1| 276|Caenorhabditis elegans Hypothetical
protein R186.1 protein.
Length = 276
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 251 DGFLSSTDDVGSFXGSWLSLQVDGLAGSL 165
DG LS D + G+WL L +G G +
Sbjct: 39 DGILSGVDKQENARGTWLGLNENGRIGMM 67
>AY373340-1|AAQ76550.1| 1007|Caenorhabditis elegans BAM-2 protein.
Length = 1007
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 137 FDSLKEVFCLHL---ECLTCSTRILMRFG 60
+D++ VFC H EC +CS R FG
Sbjct: 427 YDTISAVFCKHTDDEECSSCSIRSSEGFG 455
>AC024853-1|AAO21419.1| 1007|Caenorhabditis elegans Branching
abnormal protein 2 protein.
Length = 1007
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Frame = -1
Query: 137 FDSLKEVFCLHL---ECLTCSTRILMRFG 60
+D++ VFC H EC +CS R FG
Sbjct: 427 YDTISAVFCKHTDDEECSSCSIRSSEGFG 455
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 163 PRLPARPST*RDSQLPLKLPTSSVELRNPS 252
P++P P SQ+PL PT+ +E P+
Sbjct: 1365 PKVPQLPIGAPGSQVPLPTPTTVIEKTTPT 1394
>Z81067-4|CAB02976.2| 632|Caenorhabditis elegans Hypothetical
protein F23A7.5 protein.
Length = 632
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 57 YTEAHQYPC*ACQALQVQTKD 119
+T+ +QY C AC+ VQT +
Sbjct: 68 HTKVYQYKCRACERKMVQTME 88
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 147 RLLKEAKAAGKTVNLKRQPAPXKAAHIVSGTEK 245
RL ++ AA R P P K AH+ +G +K
Sbjct: 603 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 635
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 147 RLLKEAKAAGKTVNLKRQPAPXKAAHIVSGTEK 245
RL ++ AA R P P K AH+ +G +K
Sbjct: 1666 RLSQKRSAAALIDEQSRSPPPAKRAHLSNGFDK 1698
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,498,452
Number of Sequences: 27780
Number of extensions: 108308
Number of successful extensions: 447
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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