Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30760
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    26   4.3  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   7.5  
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ...    25   10.0 
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    25   10.0 

>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 451  LKDTSYNEIAINIKCILFFSKILLDSSDNAP 543
            LKD+ +    + ++CILF  K L   S+  P
Sbjct: 1236 LKDSHFFPPRVTLECILFLKKFLQYQSNTEP 1266


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 362 VQMYYLCVHTIIFRSRYFKLKKILKNRF 445
           V +YYLCV+ I    RYF     +  +F
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQF 406


>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 274

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +2

Query: 173 LLTRAEHSGVYNXYAGFHSITWLT*NGLSDNDLRSYPNLD 292
           LLT+     V     GF S   +  NGL   D   YPN+D
Sbjct: 51  LLTKPGVDSVVFIPTGFQSKQLIVNNGLRLGDPDCYPNVD 90


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -1

Query: 317 YDLFIGPMNLDWGMNVNRYQKGHFTLTKLSNEILRXHYRHP 195
           Y L    +N+ W   +  Y    FT T L   +   H++HP
Sbjct: 421 YSLSFSIINIFWSTALKSYIFEKFTNTILGFWLSTQHHKHP 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,201,689
Number of Sequences: 5004
Number of extensions: 42377
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)