Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30760
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical pr...    29   2.3  
L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily ass...    27   6.9  

>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 516 YFRKKKNTLYIYSYFVIRCIFKLQNRFLSIFFSLKYLDLKIIV 388
           +F   KN    Y YF + C F +   +   FF + +L + +I+
Sbjct: 68  FFEMTKNAFIGYIYFPVNCFFAVALIYKKSFFVVPFLIVMVII 110


>Z81034-5|CAB02730.1|  198|Caenorhabditis elegans Hypothetical
           protein C15C6.4 protein.
          Length = 198

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 305 IGPMNLDWGMNVNRYQKGHFTLTKLSNEILRXHY 204
           I PMN DW          HF+ TK+   IL+  Y
Sbjct: 65  IVPMNTDWQKYFRERLGNHFSSTKIEKTILKSDY 98


>L14429-6|AAK93870.2|  342|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 307 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +3

Query: 60  YKASIICNQPCRHLYKTCSENKTYLI---FGQILV 155
           YK  ++C+ PCR   K   +N+ +L+   F Q+L+
Sbjct: 68  YKGVVVCSFPCRLHEKRSQQNEKHLLTRDFYQVLI 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,904,435
Number of Sequences: 27780
Number of extensions: 228302
Number of successful extensions: 482
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)