Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30759
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    61   7e-11
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    60   9e-11
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    26   1.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   3.3  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   4.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    24   7.6  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    24   7.6  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   7.6  
SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomy...    24   10.0 
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    24   10.0 
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc...    24   10.0 
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    24   10.0 

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 60.9 bits (141), Expect = 7e-11
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = +2

Query: 20  KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIRA-TRKLNPLTNNKAMLKLNPY 196
           KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPY 333

Query: 197 A 199
           A
Sbjct: 334 A 334


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 60.5 bits (140), Expect = 9e-11
 Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
 Frame = +2

Query: 20  KKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIRA-TRKLNPLTNNKAMLKLNPY 196
           KKN+ LP+  ++N D+TRL+ SDEI+ +++A    RV RA  +K NPL N   + +LNPY
Sbjct: 274 KKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPY 333

Query: 197 A 199
           A
Sbjct: 334 A 334


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 15  NKRRTSTCPNRRWPTLTSHVFSSLMRSGRSSVLPPTNA 128
           N  + S+ P R  PT  SH  ++ + S  SS+LPP ++
Sbjct: 65  NVNKNSSSPERELPTSPSHHANTEIDSS-SSMLPPPSS 101


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 2   KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIR 136
           KTPS +K+    P P + N D   L  ++    V + P   +V R
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPSAPQVTR 630


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = -3

Query: 199 RVRIEFQHRLVVSERVQFACSTDHAFVGGSTEDLPDLIRLEKTCEVSVGHLRLGQ 35
           +V +EF+ RL + +RV+       AF+G    D+  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGSEAVDV--LMHIVRTTDRNLA-LLLGR 258


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 45  RRWPTLTSHVFSSLMRSGRSSVLPPTNA*SVLH 143
           +RWPT + H F +L  S  +   P     ++LH
Sbjct: 541 KRWPTTSLHPFGTLYESIGTIGDPKVEYKAILH 573


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 12  QNKRRTSTCPNRRWPTLTS 68
           Q KR TS C +  WP L S
Sbjct: 313 QVKRETSDCYHETWPMLQS 331


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +1

Query: 277 GLKLSKRNPAMKAEKLRERR 336
           GLKL+ R+P+   EK+R ++
Sbjct: 220 GLKLNGRHPSDNGEKIRNKK 239


>SPCC1223.15c |spc19||DASH complex subunit Spc19|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 152

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 1   EDTIKTKEELQPAPTEDGQH*PHTSS 78
           ED++KTK ELQ A  +  ++ P TS+
Sbjct: 89  EDSLKTKYELQEARLDMLKNRPATSA 114


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -1

Query: 285  LQSTLLGISKTXKFFLLRSSKIAXXFSTA 199
            LQST  G+S++  F L R+ +++   S++
Sbjct: 1238 LQSTAFGLSRSVSFLLSRNPELSKNESSS 1266


>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 457

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 39  PNRRWPTLTSHVFSSLMRSGRSSVLPPT 122
           P +  P+L + V++  +RS  +  LPPT
Sbjct: 254 PEKLRPSLKAAVYNDRLRSMPNQFLPPT 281


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   PSKQKKNFNLPQPKMANTDLTRLLKSDEI 94
           PS+ K   ++P PKM +TD    L S+ +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,225,739
Number of Sequences: 5004
Number of extensions: 18359
Number of successful extensions: 53
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)