Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30759
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0578 + 4295386-4296489,4297394-4297507                           76   9e-15
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272...    73   8e-14
08_01_0239 - 1993833-1994114,1994266-1994436,1994541-1994686,199...    28   2.4  
03_05_0511 + 25056018-25059107                                         27   7.2  

>07_01_0578 + 4295386-4296489,4297394-4297507
          Length = 405

 Score = 76.2 bits (179), Expect = 9e-15
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = +2

Query: 2   KTPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIRATRKLNPLTNNKAML 181
           + PS +KK F LP+PKMAN DL R++ SDE++ V++ P NK V R  ++ NPL N  A+L
Sbjct: 273 EAPSLKKKGFILPRPKMANADLGRIINSDEVQSVVK-PLNKEVKRREKRKNPLKNVAAVL 331

Query: 182 KLNPYAAVLXXXAIL-ELRRRKNXKVLLMPRR 274
           KLNPY       A L E  R K  K  L  +R
Sbjct: 332 KLNPYFGTARKMATLAEAARIKARKEKLDSKR 363


>03_06_0298 -
           32925441-32925998,32926371-32926730,32927161-32927230,
           32927642-32927797,32929181-32929242,32929339-32929352,
           32930421-32930520,32931474-32932574
          Length = 806

 Score = 72.9 bits (171), Expect = 8e-14
 Identities = 37/74 (50%), Positives = 48/74 (64%)
 Frame = +2

Query: 5   TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIRATRKLNPLTNNKAMLK 184
           TP+ +KK F LP+PKMAN DL+RL+ SDE++ V++ P NK V     + NPL N  A+LK
Sbjct: 273 TPALKKKGFVLPRPKMANADLSRLINSDEVQSVVK-PINKEVKLREARRNPLKNVAAVLK 331

Query: 185 LNPYAAVLXXXAIL 226
           LNPY       A L
Sbjct: 332 LNPYFGTARKMAAL 345


>08_01_0239 -
           1993833-1994114,1994266-1994436,1994541-1994686,
           1995127-1995182,1995314-1995437,1995527-1995712,
           1995787-1995845,1996413-1996630,1996853-1996966,
           1997339-1997466,1997591-1997650,1998225-1998386,
           1998796-1998883
          Length = 597

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 205 HGRVRIEFQHRLVVSERVQFACSTDHAFVGGSTEDLPDLIRLEKT 71
           HG++   FQ    + +R  + CS DHA      E+L  LI+  K+
Sbjct: 65  HGKLSSAFQRLKYLQQR--YLCSKDHALFSNLDEELEVLIKACKS 107


>03_05_0511 + 25056018-25059107
          Length = 1029

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 256 DLXVLPSAQL*DSX-PXQHGRVRIEFQHRLVVSERVQFACSTD 131
           +L +LP  +  DS    Q GR  I  + R  VSER+ F C +D
Sbjct: 746 NLLLLPDVKSSDSVITSQDGRQGILVRGRSHVSERLGFVCGSD 788


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,144
Number of Sequences: 37544
Number of extensions: 140411
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)