Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30759
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...    60   4e-10
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    29   1.2  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    29   1.2  
X17075-1|CAA34927.1|   75|Caenorhabditis elegans ceh-11 protein.       28   2.8  
L19247-1|AAC37166.1|  223|Caenorhabditis elegans homeobox protei...    28   2.8  
L15201-6|AAP82660.1|  222|Caenorhabditis elegans Egg laying defe...    28   2.8  
L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying defe...    28   2.8  
L15201-4|AAN84878.1|  223|Caenorhabditis elegans Egg laying defe...    28   2.8  
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p...    26   8.7  
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue...    26   8.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 27/66 (40%), Positives = 44/66 (66%)
 Frame = +2

Query: 11  SKQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPXNKRVIRATRKLNPLTNNKAMLKLN 190
           S+ KK +++P P MAN+D +R+++S+E+ K +RAP    V+    + NPL     + KLN
Sbjct: 271 SQLKKGWSVPLPIMANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHR-NPLKKRTLLYKLN 329

Query: 191 PYAAVL 208
           PYA++L
Sbjct: 330 PYASIL 335


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 184 FQHRLVVSERVQFACSTDHAFVGGSTEDLPDLIRLEKTCEV 62
           F  +L  S  V  AC   H+  G  +ED  DLI  E  C +
Sbjct: 98  FADQLQESNGVFEACPEAHSEQGNESEDFKDLINSETECNI 138


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -3

Query: 184 FQHRLVVSERVQFACSTDHAFVGGSTEDLPDLIRLEKTCEV 62
           F  +L  S  V  AC   H+  G  +ED  DLI  E  C +
Sbjct: 139 FADQLQESNGVFEACPEAHSEQGNESEDFKDLINSETECNI 179


>X17075-1|CAA34927.1|   75|Caenorhabditis elegans ceh-11 protein.
          Length = 75

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 ETQSLRGRAEXXSYLRAAQKEELXGLADAEKSGLKLSKRNPAMKAEKLRER 333
           +T  L  + +  SY+   Q+EEL          +K+  +N  MKA+K ++R
Sbjct: 13  QTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMKAKKEKQR 63


>L19247-1|AAC37166.1|  223|Caenorhabditis elegans homeobox protein
           protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 ETQSLRGRAEXXSYLRAAQKEELXGLADAEKSGLKLSKRNPAMKAEKLRER 333
           +T  L  + +  SY+   Q+EEL          +K+  +N  MKA+K ++R
Sbjct: 123 QTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMKAKKEKQR 173


>L15201-6|AAP82660.1|  222|Caenorhabditis elegans Egg laying
           defective protein 5,isoform c protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 ETQSLRGRAEXXSYLRAAQKEELXGLADAEKSGLKLSKRNPAMKAEKLRER 333
           +T  L  + +  SY+   Q+EEL          +K+  +N  MKA+K ++R
Sbjct: 122 QTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMKAKKEKQR 172


>L15201-5|AAA27943.2|  219|Caenorhabditis elegans Egg laying
           defective protein 5,isoform a protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 ETQSLRGRAEXXSYLRAAQKEELXGLADAEKSGLKLSKRNPAMKAEKLRER 333
           +T  L  + +  SY+   Q+EEL          +K+  +N  MKA+K ++R
Sbjct: 119 QTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMKAKKEKQR 169


>L15201-4|AAN84878.1|  223|Caenorhabditis elegans Egg laying
           defective protein 5,isoform b protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 181 ETQSLRGRAEXXSYLRAAQKEELXGLADAEKSGLKLSKRNPAMKAEKLRER 333
           +T  L  + +  SY+   Q+EEL          +K+  +N  MKA+K ++R
Sbjct: 123 QTSVLEAKFQQSSYVSKKQREELRLQTQLTDRQIKIWFQNRRMKAKKEKQR 173


>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
           protein T04H1.4b protein.
          Length = 1312

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 100
           T   QK+N +LP  +    DLTR + S E  K
Sbjct: 896 TAISQKRNEDLPDAQFKKDDLTRNVSSKEEEK 927


>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical
           protein T04H1.4a protein.
          Length = 1298

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 100
           T   QK+N +LP  +    DLTR + S E  K
Sbjct: 882 TAISQKRNEDLPDAQFKKDDLTRNVSSKEEEK 913


>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
           ceRAD50 protein.
          Length = 1298

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   TPSKQKKNFNLPQPKMANTDLTRLLKSDEIRK 100
           T   QK+N +LP  +    DLTR + S E  K
Sbjct: 882 TAISQKRNEDLPDAQFKKDDLTRNVSSKEEEK 913


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,888,545
Number of Sequences: 27780
Number of extensions: 109890
Number of successful extensions: 320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)