Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30757
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.40 
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    28   0.71 
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    28   0.93 
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    28   0.93 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    27   1.2  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   6.6  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    25   6.6  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   8.7  
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe...    25   8.7  

>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 234

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 97  PAPSRRXTENCTVRYTTTGTVSPRSMHD 180
           PAP R    + + R + TGT SP+SM +
Sbjct: 163 PAPDRHTPSSASSRASETGTTSPQSMRN 190


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 0.71
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +3

Query: 231 NDARSILLRWHAYIDDVFQKHKESAYVRPYTRSELENPGVQVRSVSVETPG 383
           N   S  ++ H   + V  KH E       T++ELE     +R   ++TPG
Sbjct: 46  NTLFSTTIKSHMGPEKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPG 96


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 393 NTLNTFWMLSDVNLSRGLXFSDNGARVRSLSLHLQ 497
           +T   +W+LS + L   L F D G   + L LH Q
Sbjct: 260 DTCYAYWVLSSLKLLDALPFIDGGELEKYLLLHAQ 294


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 4/31 (12%)
 Frame = +1

Query: 64  LTSIRSAT---CWSPAPSRRXTENCT-VRYT 144
           +T++RSA+   C SP PSRR ++  T  RYT
Sbjct: 543 ITNVRSASAPLCSSPVPSRRYSQYATNARYT 573


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 231 NDARSILLRWHAYIDDVFQKHKESAYVRPYTRSELENPGV 350
           N   S L + H  +D+V ++H+    + P   S LE  G+
Sbjct: 464 NSEWSKLRKLHKMVDEVLERHRHRYEINPAFVSRLEQGGI 503


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 419 QRRELVARTRLLRQRGPCTL 478
           Q REL  R R+LR+ G CTL
Sbjct: 834 QLRELKIRQRVLRRLGFCTL 853


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 372 PPTRTSLARPGSRAQI 325
           PPTRTS  RP SR  +
Sbjct: 239 PPTRTSTTRPLSRVNV 254


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -3

Query: 110 REGAGLQHVAERI--DVKRPSLPVWQSNG 30
           R  A L+ +   +  DV +PSLPV++++G
Sbjct: 91  RSAASLKQLDNTVGFDVSKPSLPVFENSG 119


>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +1

Query: 139 YTTTGTVSPRSMHDPEHRYLEQFGXXADEATTM 237
           + T G   P + +DP   Y EQF   A + T +
Sbjct: 326 FKTPGATYPFASNDPLMNYFEQFTENAKKRTDL 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,842
Number of Sequences: 5004
Number of extensions: 41025
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)