Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30757
         (511 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0418 + 25077748-25078101,25079413-25079538,25080683-250815...    30   0.94 
01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027     28   3.8  
07_03_0489 - 18686806-18687681,18687816-18687830                       28   5.0  
07_01_0103 - 779554-780434,780542-780791                               27   6.6  
01_05_0563 - 23309557-23309979                                         27   6.6  
07_03_0496 - 18758767-18760113                                         27   8.8  
06_02_0037 - 10856616-10856915,10857527-10860238                       27   8.8  
03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,367...    27   8.8  

>04_04_0418 +
           25077748-25078101,25079413-25079538,25080683-25081593,
           25081970-25082453
          Length = 624

 Score = 30.3 bits (65), Expect = 0.94
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -1

Query: 169 YAVKLCPLLCIEPYSSLXSGERALDSNMLPSVSMSRGRVCPF--GNLTVPVAIASSTF 2
           Y   LC  LCI   SS   G  AL +NM  +  +SRG V     G + V  A+ + TF
Sbjct: 157 YIDNLCIALCIGTNSSAWLGTAALVTNM-RNFPLSRGTVAGLIKGYVAVSAAVYTETF 213


>01_06_1627 + 38742294-38742746,38742831-38743120,38743544-38744027
          Length = 408

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +3

Query: 333 LENPGVQVRSVSVETPGGQPNT 398
           L++ GV VR V+VE P   PNT
Sbjct: 179 LQSRGVTVRRVTVEAPADSPNT 200


>07_03_0489 - 18686806-18687681,18687816-18687830
          Length = 296

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 126 VLCXPARGRWTPTCC 82
           +LC P +G WTP  C
Sbjct: 120 ILCRPGKGTWTPDSC 134


>07_01_0103 - 779554-780434,780542-780791
          Length = 376

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -3

Query: 209 PNCSRYLCSGSCML----RGETVPVVVYRTVQFSVFRREGAGLQHVAERIDVK 63
           PN SR   SGSC L     G+T+ V      +  + RR  AG Q VAER+  +
Sbjct: 118 PNMSRAAASGSCCLLGAISGDTLYVANAGDSRAVLGRRAAAG-QTVAERLSTE 169


>01_05_0563 - 23309557-23309979
          Length = 140

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = -3

Query: 233 VVASSAIXPNCSRYLCSGSCMLRGETVPVVVYRTVQFSVFRREGAGLQHVA 81
           V +SS+I P C  + C   C+ R E      Y   QFS +RR GAG   +A
Sbjct: 39  VGSSSSIMPPCF-HACFDQCVQREE------YWFCQFSCYRRCGAGAIAIA 82


>07_03_0496 - 18758767-18760113
          Length = 448

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 126 VLCXPARGRWTPTCC 82
           +LC P +G WTP  C
Sbjct: 170 ILCQPGKGIWTPDSC 184


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 183 GTQIP*TIWXDX**GHNDARSILLRWHAYIDDVFQKHKESAYV 311
           G + P  +W D   GHN    ILL  HA    VF     +A+V
Sbjct: 449 GLEPPGGVWRDNEGGHNGGDLILLATHAIRYKVFFYCNSAAFV 491


>03_01_0479 + 3671792-3671844,3671950-3675691,3675815-3675895,
            3675973-3676042,3676157-3676224
          Length = 1337

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 247  MDRASLWPHQXSHQI-VQGICVPGRACYAVKLCPLL 143
            M  A+L P   S  + +QG+C  GR C A+ +  +L
Sbjct: 1153 MQFANLKPSDMSCDVLIQGLCAMGRTCDAMNILEML 1188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,676,571
Number of Sequences: 37544
Number of extensions: 311565
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)