Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS30756
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 104 4e-23
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 100 8e-22
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 100 8e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 74 6e-14
06_03_1333 - 29410014-29410052,29410071-29410322,29410601-294106... 28 5.4
05_02_0114 + 6753868-6754126,6754225-6754592,6754704-6754992,675... 27 7.1
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 104 bits (250), Expect = 4e-23
Identities = 49/77 (63%), Positives = 59/77 (76%)
Frame = -3
Query: 485 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPN 306
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 305 IGYGSNKKTRHMLPNGF 255
IGYGS+KKTRH LPN F
Sbjct: 378 IGYGSDKKTRHYLPNKF 394
Score = 31.9 bits (69), Expect = 0.33
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 273 YAPKWIRKVLVHNVKELEIXXMQNR 199
Y P +K +VHNV ELE+ M NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 100 bits (239), Expect = 8e-22
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = -3
Query: 473 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPNIGYG 294
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 293 SNKKTRHMLPNGF 255
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/52 (65%), Positives = 38/52 (73%)
Frame = -2
Query: 273 YAPKWIRKVLVHNVKELEIXXMQNRKYCAEIAHGVSSKKRKLIVERAQQLSI 118
Y P +K +VHNV ELE+ M NR YCAEIAH VS+KKRK IVERA QL I
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDI 118
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 100 bits (239), Expect = 8e-22
Identities = 48/73 (65%), Positives = 56/73 (76%)
Frame = -3
Query: 473 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDXRVRRRFKGQYLMPNIGYG 294
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 293 SNKKTRHMLPNGF 255
S+KKTRH LPN F
Sbjct: 60 SDKKTRHYLPNKF 72
Score = 74.1 bits (174), Expect = 6e-14
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -2
Query: 273 YAPKWIRKVLVHNVKELEIXXMQNRKYCAEIAHGVSSKKRKLIVERAQQLSICRVTNAAA 94
Y P +K +VHNV ELE+ M NR YCAEIAH VS+KKRK IVERA QL I VTN A
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIV-VTNKLA 125
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 74.1 bits (174), Expect = 6e-14
Identities = 31/41 (75%), Positives = 36/41 (87%)
Frame = -3
Query: 377 NWRKPRGIDXRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGF 255
+WR+P+GID RVRR+FKG LMPNIGYGS+KKTRH LPN F
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKF 139
Score = 74.1 bits (174), Expect = 6e-14
Identities = 38/60 (63%), Positives = 42/60 (70%)
Frame = -2
Query: 273 YAPKWIRKVLVHNVKELEIXXMQNRKYCAEIAHGVSSKKRKLIVERAQQLSICRVTNAAA 94
Y P +K +VHNV ELE+ M NR YCAEIAH VS+KKRK IVERA QL I VTN A
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIV-VTNKLA 192
Score = 29.9 bits (64), Expect = 1.3
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -3
Query: 473 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 381
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>06_03_1333 -
29410014-29410052,29410071-29410322,29410601-29410633,
29411035-29411045,29411420-29415325,29415437-29415920
Length = 1574
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 246 GPYESIWEHMTGLLVGTVTNVGHQVLTLEPPADS 347
G YE+ EH G L G V N H V ++ A S
Sbjct: 97 GTYEAAEEHAKGCLQGLVLNTRHTVRNIKKKACS 130
>05_02_0114 +
6753868-6754126,6754225-6754592,6754704-6754992,
6755838-6755909,6757440-6757666
Length = 404
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -1
Query: 193 LRRDRSWCLFEEAEADRGKSPAAQHLQSDECGRIASAPRRMNKYN 59
L + +W L E E RGK P + + +D +AS RR K++
Sbjct: 262 LAQYHNWLLREAVERMRGKYPTTKLVYADFYKPVASLVRRPAKFD 306
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,111,800
Number of Sequences: 37544
Number of extensions: 255497
Number of successful extensions: 850
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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